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Report for CCDS21289.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21289.1 Public Mus musculus 7 Ldha 23 108 98 CCDS HistoryNCBI Gene:16828Re-query CCDS DB by CCDS ID:21289.1Re-query CCDS DB by GeneID:16828See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21289.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048209.15 ENSMUSP00000036386.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048209.15Link to Ensembl Protein Viewer:ENSMUSP00000036386.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000048209Re-query CCDS DB by Protein ID:ENSMUSP00000036386
Original member Current member EBI ENSMUST00000005051.5 ENSMUSP00000103267.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005051.5Link to Ensembl Protein Viewer:ENSMUSP00000103267.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000005051Re-query CCDS DB by Protein ID:ENSMUSP00000103267
Original member Current member NCBI NM_010699.2 NP_034829.1 Accepted alive Link to Nucleotide Sequence:NM_010699.2Link to Protein Sequence:NP_034829.1Re-query CCDS DB by Nucleotide ID:NM_010699Re-query CCDS DB by Protein ID:NP_034829Link to BLAST:NP_034829.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034829.1 332 P06151 332 100% 0 0

Chromosomal Locations for CCDS 21289.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 46847620 46847745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46848973 46849090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46850178 46850351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46850885 46851058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46851877 46851994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46853983 46854106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46854977 46855141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGGCAACCCTCAAGGACCAGCTGATTGTGAATCTTCTTAAGGAAGAGCAGGCTCCCCAGAACAAGATTA
CA
GTTGTTGGGGTTGGTGCTGTTGGCATGGCTTGTGCCATCAGTATCTTAATGAAGGACTTGGCGGATGA
G
CTTGCCCTTGTTGACGTCATGGAAGACAAACTCAAGGGCGAGATGATGGATCTCCAGCATGGCAGCCTC
TTC
CTTAAAACACCAAAAATTGTCTCCAGCAAAGACTACTGTGTAACTGCGAACTCCAAGCTGGTCATTA
TC
ACCGCGGGGGCCCGTCAGCAAGAGGGGGAGAGCCGGCTCAACCTGGTCCAGCGAAACGTGAACATCTT
C
AAGTTCATCATTCCCAACATTGTCAAGTACAGTCCACACTGCAAGCTGCTGATCGTCTCCAATCCAGTG
GAT
ATCTTGACCTACGTGGCTTGGAAAATCAGTGGCTTTCCCAAAAACCGAGTAATTGGAAGTGGTTGCA
AT
CTGGATTCAGCGCGGTTCCGTTACCTGATGGGAGAGAGGCTGGGGGTTCACGCGCTGAGCTGTCACGG
C
TGGGTCCTGGGAGAACATGGCGACTCCAGTGTGCCTGTGTGGAGTGGTGTGAATGTTGCCGGCGTCTCC
CTG
AAGTCTCTTAACCCAGAACTGGGCACTGACGCAGACAAGGAGCAGTGGAAGGAGGTTCACAAGCAGG
TG
GTGGACAGTGCCTACGAGGTGATCAAGCTGAAAGGTTACACATCCTGGGCCATTGGCCTCTCTGTGGC
A
GACTTGGCTGAGAGCATAATGAAGAACCTTAGGCGGGTGCATCCCATTTCCACCATGATTAAGGGTCTC
TAT
GGAATCAATGAGGATGTCTTCCTCAGTGTCCCATGTATCCTGGGACAAAATGGAATCTCGGATGTTG
TG
AAGGTGACACTGACTCCTGAGGAAGAGGCCCGCCTGAAGAAGAGCGCAGACACCCTCTGGGGAATCCA
G
AAGGAGCTGCAGTTCTAA


Translation (332 aa):
MATLKDQLIVNLLKEEQAPQNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSL
F
LKTPKIVSSK
DYCVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPHCKLLIVSNPV
D
ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGWVLGEHGDSS
VPVWSGVNVAGVS
L
KSLNPELGTDADKEQWKEVHKQVVD
SAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGL
Y
GINEDVFLSVPCILGQNGISDVVKVTLTPEEEARLKKSADTLWGIQKELQF




Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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