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Report for CCDS10379.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10379.2 Public Homo sapiens 15 TTC23 24 110 108 CCDS HistoryNCBI Gene:64927Re-query CCDS DB by CCDS ID:10379.2Re-query CCDS DB by GeneID:64927See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 10379.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394132.7 ENSP00000377690.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394132.7Link to Ensembl Protein Viewer:ENSP00000377690.2Re-query CCDS DB by Nucleotide ID:ENST00000394132Re-query CCDS DB by Protein ID:ENSP00000377690
Original member Current member EBI ENST00000394135.7 ENSP00000377692.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394135.7Link to Ensembl Protein Viewer:ENSP00000377692.3Re-query CCDS DB by Nucleotide ID:ENST00000394135Re-query CCDS DB by Protein ID:ENSP00000377692
Original member Current member EBI ENST00000558663.5 ENSP00000452923.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000558663.5Link to Ensembl Protein Viewer:ENSP00000452923.1Re-query CCDS DB by Nucleotide ID:ENST00000558663Re-query CCDS DB by Protein ID:ENSP00000452923
Original member Current member NCBI NM_001288615.3 NP_001275544.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001288615.3Link to Protein Sequence:NP_001275544.1Re-query CCDS DB by Nucleotide ID:NM_001288615Re-query CCDS DB by Protein ID:NP_001275544Link to BLAST:NP_001275544.1
Original member Current member NCBI NM_001288616.3 NP_001275545.1 Accepted alive Link to Nucleotide Sequence:NM_001288616.3Link to Protein Sequence:NP_001275545.1Re-query CCDS DB by Nucleotide ID:NM_001288616Re-query CCDS DB by Protein ID:NP_001275545Link to BLAST:NP_001275545.1
Original member Current member NCBI NM_001353869.2 NP_001340798.1 Accepted alive Link to Nucleotide Sequence:NM_001353869.2Link to Protein Sequence:NP_001340798.1Re-query CCDS DB by Nucleotide ID:NM_001353869Re-query CCDS DB by Protein ID:NP_001340798Link to BLAST:NP_001340798.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001275544.1 447 Q5W5X9-1 447 100% 0 0
NP_001275545.1 447 Q5W5X9-1 447 100% 0 0
NP_001340798.1 447 Q5W5X9-1 447 100% 0 0

Chromosomal Locations for CCDS 10379.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 99138010 99138127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99139317 99139399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99156148 99156297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99161740 99161867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99175050 99175155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99199919 99200096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99218588 99218713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99218898 99219048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99221741 99221864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99228533 99228712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1344 nt):
ATGCAAGAATCACAGGAAACCCACATATCCAACCACCTAGATGAAGTTGTTGCTGCTGTTAGCATCACTC
AT
AGAAAGAAGTTCCAAAACAAGCTGCTTCAGACAGCACTATTCCAGCCTCCTCGAGAGAAACTCCACCT
C
TGTGAAGAGAAAGCAAAGTCCTATTCCAACAGTCATGAGTACAAACAGGCCGTCCATGAGCTTGTGCGT
TGC
GTAGCACTGACAAGAATTTGCTATGGAGACTCACATTGGAAACTAGCAGAGGCACATGTTAATCTGG
CT
CAAGGCTACCTCCAGCTGAAAGGACTGTCACTGCAAGCAAAACAACATGCAGAAAAAGCCAGACAAAT
C
CTCGCCAACTCCATTGTGCCTCCCTATAGTGAGAATACAGATGTTTTCAAGTTTTCCATTGAGCTTTTC
CAT
ACCATGGGCAGAGCTTTACTCTCCCTTCAAAAATTTAAGGAAGCTGCAGAGAATTTGACAAAAGCAG
AG
AGACTTTCAAAGGAGCTGCTACAATGTGGAAGAATTATAAAGGAAGAATGGATAGAAATTGAAGCACG
G
ATCAGATTATCATTTGCACAGGTGTATCAAGGTCAGAAGAAGTCAAAAGAAGCTTTGTCCCACTATCAA
GCA
GCTTTGGAATATGTTGAGATCAGTAAAGGTGAAACAAGTCGTGAGTGTGTACCCATATTGAGAGAAT
TA
GCAGGTGTAGAGCAAGCCCTGGGACTCCACGATGTATCCATCAACCACTTCCTCCAGGCACATCTTAT
C
ATCCTGAGTAGAAGCCCCTCTCAAGTGGAGGCAGCAGACTCGGCACACATCGTCGCCCATGCTGCTGTC
GCT
TCAGGGAGACACGAGCACCATGATGTAGCTGAGCAGTATTTTCAAGAGAGCATGGCTCATCTTAAGG
AT
TCTGAAGGGATGGGAAGAACCAAATTTCTTTCAATTCAAGATGAATTTTGCCATTTTCTACAAATGAC
T
GGACAAAAAGAGAGAGCAACCTCGATCCTGAGAGAGTCCCTGGAAGCCAAAGTGGAAGCATTTGGCGAT
TTC
AGTCCCGAGGTGGCAGAGACATACCGGCTCCTGGGAGGAGCAGACCTGGCGCAGGGGAACCACAGTG
GG
GCCCGCAAGAAACTGAAGAAGTGTCTCCAGATCCAGACCCTCTTATATGGACCGCAGGACAAAAGGAC
T
CTGGCCACCCAGCAGGCCATGGGCATGCTGTCCACGGCCCCCAAGGTTGCTTCGAAGCCAAGGCAGGCA
TCA
AAAGCCAAAGTGGCCTTCTGCACCAGCATCCCTCAGGACACCCTGCTGGGGAAGGCCCGGCCCGGCA
CA
ACAGCAGACTGA


Translation (447 aa):
MQESQETHISNHLDEVVAAVSITHRKKFQNKLLQTALFQPPREKLHLCEEKAKSYSNSHEYKQAVHELVR
C
VALTRICYGDSHWKLAEAHVNLAQGYLQLK
GLSLQAKQHAEKARQILANSIVPPYSENTDVFKFSIELF
H
TMGRALLSLQ
KFKEAAENLTKAERLSKELLQCGRIIKEEWIEIEARIRLSFAQVYQGQKKSKEALSHYQ
A
ALEYVEISKGETSRECVPILRELAGVEQALGLHDVSINHFLQ
AHLIILSRSPSQVEAADSAHIVAHAAV
A
SGRHEHH
DVAEQYFQESMAHLKDSEGMGRTKFLSIQDEFCHFLQMTGQKERATSILRESLEAKVEAFGD
F
SPEVAETYRLLGGADLAQGNHSGARKKLKK
CLQIQTLLYGPQDKRTLATQQAMGMLSTAPKVASKPRQA
S
KAKVAFCTSIPQDTLLGKARPGTTAD




Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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