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Report for CCDS54914.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54914.1 Public Homo sapiens 5 PCDHA2 24 110 108 CCDS HistoryNCBI Gene:56146Re-query CCDS DB by CCDS ID:54914.1Re-query CCDS DB by GeneID:56146See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54914.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000526136.2 ENSP00000431748.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000526136.2Link to Ensembl Protein Viewer:ENSP00000431748.1Re-query CCDS DB by Nucleotide ID:ENST00000526136Re-query CCDS DB by Protein ID:ENSP00000431748
Original member Current member NCBI NM_018905.3 NP_061728.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018905.3Link to Protein Sequence:NP_061728.1Re-query CCDS DB by Nucleotide ID:NM_018905Re-query CCDS DB by Protein ID:NP_061728Link to BLAST:NP_061728.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061728.1 948 Q9Y5H9-1 948 100% 0 0

Chromosomal Locations for CCDS 54914.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 140794965 140797352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140978949 140979007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140982475 140982563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141009627 141009937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2847 nt):
ATGGCGTCTTCTATCAGAAGGGGCCGAGGGGCCTGGACACGGCTGCTCTCGCTTCTGCTCCTCGCAGCCT
GG
GAGGTGGGGAGCGGCCAGCTCCGCTACTCCGTCCCCGAGGAGGCCAAACACGGCACCTTCGTGGGCCG
C
ATCGCGCAGGACCTGGGGCTGGAGCTGGAGGAGCTGGTGCCGCGCCTGTTCCGGGTGGCGTCCAAAAGA
CAC
GGGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGGGAGG
AG
CTGTGCGGGCGGAGCGCGGAATGTAGCATCCACGTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTT
C
CATGTGGAAGTGGAGGTGAAGGACATTAACGACAACCCGCCAATATTTCCAATGACAGTAAAGACTATC
CGG
TTTCCCGAATCAAGGCTGCTTGATTCTCGGTTTCCTCTAGAGGGAGCATCTGATGCAGATATAGGAG
TA
AATGCTCTTCTCTCCTACAAGCTCAGCTCCAGTGAGTTTTTCTTCCTAGATATACAGGCAAATGATGA
A
CTAAGCGAATCTTTGTCTCTCGTGCTGGGGAAATCGCTGGACAGAGAGGAAACTGCTGAGGTTAATTTG
TTA
CTGGTGGCTACTGATGGGGGCAAACCTGAGCTCACGGGCACCGTTCAAATACTTATTAAGGTATTAG
AT
GTAAATGACAATGAACCAACTTTTGCCCAATCAGTTTACAAAGTAAAATTGTTAGAGAATACGGCAAA
T
GGGACCTTAGTGGTTAAGTTAAACGCTTCTGATGCAGATGAAGGACCGAACAGCGAGATTGTGTATTCA
CTC
GGTAGTGATGTGTCCTCCACTATACAGACTAAGTTTACCATAGATCCCATCTCAGGGGAAATCAGAA
CT
AAGGGAAAATTAGATTATGAAGAAGCAAAGTCCTACGAGATTCAGGTCACTGCAACTGACAAAGGAAC
C
CCTTCAATGTCAGGACATTGTAAAATTTCATTAAAACTTGTGGACATCAATGATAACACACCAGAAGTC
TCA
ATAACGTCTCTCTCACTTCCCATCTCAGAGAACGCTTCCCTGGGCACTGTCATTGCTCTCATCACGG
TG
TCGGATCGCGACTCTGGTACGAATGGACATGTCACCTGCTCCCTGACGCCCCACGTCCCTTTCAAGCT
G
GTGTCCACCTTCAAGAATTACTACTCGTTGGTGCTGGACAGCGCCCTGGACCGCGAGAGCGTGTCAGCC
TAT
GAGCTGGTGGTGACCGCACGGGACGGGGGCTCGCCTTCACTGTGGGCCACCACCAGCGTGTCCATCG
AG
GTGGCCGACGTGAACGACAACGCGCCGGCGTTCGCACAGCCTGAGTACACAGTATTCGTGAAGGAGAA
C
AACCCGCCGGGCTGCCACATCTTCACGGTGTCAGCGTGGGATGCGGACGCGCAGGAGAACGCGCTGGTG
TCC
TACTCGCTGGTGGAGCGGCGGGTGGGCGAGCGCGCGTTGTCGAGCTACGTTTCGGTGCACGCGGAGA
GC
GGCAAGGTGTACGCGCTGCAGCCGCTGGACCACGAGGAAGTGGAGCTGCTGCAGTTCCAGGTGAGCGC
G
CGGGATGCGGGCGTGCCGCCTCTGGGCAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGAC
AAC
GCGCCGGCACTGTTGGCGCCTAGGGCTGGCACCGCTGCTGGCGCAGTGAGTGAGCTGGTGCCGTGGT
CG
GTGGGTGCAGGGCACGTGGTGGCGAAGGTGCGCGCAGTGGACGCTGACTCAGGCTACAACGCGTGGCT
T
TCGTACGAGCTTCAGCTGGGTACTGGCAGCGCTCGCATCCCGTTCCGCGTGGGGCTATACACGGGTGAG
ATC
AGCACGACACGTGCCCTAGACGAGGCTGACTCCCCTCGACACCGCCTACTCGTGCTGGTGAAGGACC
AC
GGCGAACCAGCGTTGACAGCCACGGCCACCGTGTTAGTGTCGTTGGTGGAAAGTGGCCAGGCACCCAA
G
GCCTCGTCGCGGGCGTGGGTGGGCGCCGCGGGCTCAGAGGCTACGCTGGTGGATGTCAACGTGTACCTG
ATC
ATCGCCATCTGCGCGGTATCCAGCCTGTTGGTGCTCACGGTGCTGCTGTACACTGCGCTGCGGTGCT
CG
GTGCCACCCACCGAGGGTGCGCGCGCGCCAGGAAAGCCCACGCTGGTGTGCTCCAGCGCCGTGGGGAG
C
TGGTCTTACTCGCAGCAGAGGCGGCAGAGGGTGTGCTCTGGGGAGGACCCCCCCAAGACGGACCTCATG
GCC
TTCAGCCCTAGCTTATCTCAAGGTCCAGACTCCGCAGAAGAGAAACAGCTCTCAGAATCAGAATACG
TA
GGAAAGCCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTC
T
GTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTA
TCC
AGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACA
GC
TGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCAT
T
ATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGAC
TTC
ATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGG
AG
AAAAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACCAGTGA


Translation (948 aa):
MASSIRRGRGAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELVPRLFRVASKR
H
GDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVEVEVKDINDNPPIFPMTVKTI
R
FPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFLDIQANDELSESLSLVLGKSLDREETAEVNL
L
LVATDGGKPELTGTVQILIKVLDVNDNEPTFAQSVYKVKLLENTANGTLVVKLNASDADEGPNSEIVYS
L
GSDVSSTIQTKFTIDPISGEIRTKGKLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEV
S
ITSLSLPISENASLGTVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA
Y
ELVVTARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQENALV
S
YSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPLGSNVTLQVFVLDEND
N
APALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDADSGYNAWLSYELQLGTGSARIPFRVGLYTGE
I
STTRALDEADSPRHRLLVLVKDHGEPALTATATVLVSLVESGQAPKASSRAWVGAAGSEATLVDVNVYL
I
IAICAVSSLLVLTVLLYTALRCSVPPTEGARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLM
A
FSPSLSQGPDSAEEKQLSESEYVGK
PRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTV
S
SATP
EPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSD
F
ITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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