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Report for CCDS42164.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42164.1 Public Homo sapiens 16 CYLD 24 110 108 CCDS HistoryNCBI Gene:1540Re-query CCDS DB by CCDS ID:42164.1Re-query CCDS DB by GeneID:1540See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42164.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398568.6 ENSP00000381574.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398568.6Link to Ensembl Protein Viewer:ENSP00000381574.2Re-query CCDS DB by Nucleotide ID:ENST00000398568Re-query CCDS DB by Protein ID:ENSP00000381574
Original member Current member EBI ENST00000564326.5 ENSP00000454515.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000564326.5Link to Ensembl Protein Viewer:ENSP00000454515.1Re-query CCDS DB by Nucleotide ID:ENST00000564326Re-query CCDS DB by Protein ID:ENSP00000454515
Original member Current member EBI ENST00000569418.5 ENSP00000457576.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000569418.5Link to Ensembl Protein Viewer:ENSP00000457576.1Re-query CCDS DB by Nucleotide ID:ENST00000569418Re-query CCDS DB by Protein ID:ENSP00000457576
Original member Current member NCBI NM_001042355.2 NP_001035814.1 Accepted alive Link to Nucleotide Sequence:NM_001042355.2Link to Protein Sequence:NP_001035814.1Re-query CCDS DB by Nucleotide ID:NM_001042355Re-query CCDS DB by Protein ID:NP_001035814Link to BLAST:NP_001035814.1
Original member Current member NCBI NM_001042412.3 NP_001035877.1 Accepted alive Link to Nucleotide Sequence:NM_001042412.3Link to Protein Sequence:NP_001035877.1Re-query CCDS DB by Nucleotide ID:NM_001042412Re-query CCDS DB by Protein ID:NP_001035877Link to BLAST:NP_001035877.1
Original member Current member NCBI NM_001378744.1 NP_001365673.1 Accepted alive Link to Nucleotide Sequence:NM_001378744.1Link to Protein Sequence:NP_001365673.1Re-query CCDS DB by Nucleotide ID:NM_001378744Re-query CCDS DB by Protein ID:NP_001365673Link to BLAST:NP_001365673.1
Original member Current member NCBI NM_001378745.1 NP_001365674.1 Accepted alive Link to Nucleotide Sequence:NM_001378745.1Link to Protein Sequence:NP_001365674.1Re-query CCDS DB by Nucleotide ID:NM_001378745Re-query CCDS DB by Protein ID:NP_001365674Link to BLAST:NP_001365674.1
Original member Current member NCBI NM_001378746.1 NP_001365675.1 Accepted alive Link to Nucleotide Sequence:NM_001378746.1Link to Protein Sequence:NP_001365675.1Re-query CCDS DB by Nucleotide ID:NM_001378746Re-query CCDS DB by Protein ID:NP_001365675Link to BLAST:NP_001365675.1
Original member Current member NCBI NM_001378747.1 NP_001365676.1 Accepted alive Link to Nucleotide Sequence:NM_001378747.1Link to Protein Sequence:NP_001365676.1Re-query CCDS DB by Nucleotide ID:NM_001378747Re-query CCDS DB by Protein ID:NP_001365676Link to BLAST:NP_001365676.1
Original member Current member NCBI NM_001378748.1 NP_001365677.1 Accepted alive Link to Nucleotide Sequence:NM_001378748.1Link to Protein Sequence:NP_001365677.1Re-query CCDS DB by Nucleotide ID:NM_001378748Re-query CCDS DB by Protein ID:NP_001365677Link to BLAST:NP_001365677.1
Original member Current member NCBI NM_001378749.1 NP_001365678.1 Accepted alive Link to Nucleotide Sequence:NM_001378749.1Link to Protein Sequence:NP_001365678.1Re-query CCDS DB by Nucleotide ID:NM_001378749Re-query CCDS DB by Protein ID:NP_001365678Link to BLAST:NP_001365678.1
Original member Current member NCBI NM_001378750.1 NP_001365679.1 Accepted alive Link to Nucleotide Sequence:NM_001378750.1Link to Protein Sequence:NP_001365679.1Re-query CCDS DB by Nucleotide ID:NM_001378750Re-query CCDS DB by Protein ID:NP_001365679Link to BLAST:NP_001365679.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035814.1 953 Q9NQC7-2 953 100% 0 0
NP_001035877.1 953 Q9NQC7-2 953 100% 0 0
NP_001365673.1 953 Q9NQC7-2 953 100% 0 0
NP_001365674.1 953 Q9NQC7-2 953 100% 0 0
NP_001365675.1 953 Q9NQC7-2 953 100% 0 0
NP_001365676.1 953 Q9NQC7-2 953 100% 0 0
NP_001365677.1 953 Q9NQC7-2 953 100% 0 0
NP_001365678.1 953 Q9NQC7-2 953 100% 0 0
NP_001365679.1 953 Q9NQC7-2 953 100% 0 0

Chromosomal Locations for CCDS 42164.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 50749699 50750202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50751604 50751906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50754319 50754424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50776179 50776277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50777825 50777941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50779665 50780044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50781246 50781411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50782325 50782466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50784329 50784451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50786855 50786946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50787786 50787852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50791558 50791690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50792597 50792705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50793546 50793664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50794212 50794428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50796324 50796508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2862 nt):
ATGAGTTCAGGCTTATGGAGCCAAGAAAAAGTCACTTCACCCTACTGGGAAGAGCGGATTTTTTACTTGC
TT
CTTCAAGAATGCAGCGTTACAGACAAACAAACACAAAAGCTCCTTAAAGTACCGAAGGGAAGTATAGG
A
CAGTATATTCAAGATCGTTCTGTGGGGCATTCAAGGATTCCTTCTGCAAAAGGCAAGAAAAATCAGATT
GGA
TTAAAAATTCTAGAGCAACCTCATGCAGTTCTCTTTGTTGATGAAAAGGATGTTGTAGAGATAAATG
AA
AAGTTCACAGAGTTACTTTTGGCAATTACCAATTGTGAGGAGAGGTTCAGCCTGTTTAAAAACAGAAA
C
AGACTAAGTAAAGGCCTCCAAATAGACGTGGGCTGTCCTGTGAAAGTACAGCTGAGATCTGGGGAAGAA
AAA
TTTCCTGGAGTTGTACGCTTCAGAGGACCCCTGTTAGCAGAGAGGACAGTCTCCGGAATATTCTTTG
GA
GTTGAATTGCTGGAAGAAGGTCGTGGTCAAGGTTTCACTGACGGGGTGTACCAAGGGAAACAGCTTTT
T
CAGTGTGATGAAGATTGTGGCGTGTTTGTTGCATTGGACAAGCTAGAACTCATAGAAGATGATGACACT
GCA
TTGGAAAGTGATTACGCAGGTCCTGGGGACACAATGCAGGTCGAACTTCCTCCTTTGGAAATAAACT
CC
AGAGTTTCTTTGAAGGTTGGAGAAACAATAGAATCTGGAACAGTTATATTCTGTGATGTTTTGCCAGG
A
AAAGAAAGCTTAGGATATTTTGTTGGTGTGGACATGGATAACCCTATTGGCAACTGGGATGGAAGATTT
GAT
GGAGTGCAGCTTTGTAGTTTTGCGTGTGTTGAAAGTACAATTCTATTGCACATCAATGATATCATCC
CA
GAGAGTGTGACGCAGGAAAGGAGGCCTCCCAAACTTGCCTTTATGTCAAGAGGTGTTGGGGACAAAGG
T
TCATCCAGTCATAATAAACCAAAGGCTACAGGATCTACCTCAGACCCTGGAAATAGAAACAGATCTGAA
TTA
TTTTATACCTTAAATGGGTCTTCTGTTGACTCACAACCACAATCCAAATCAAAAAATACATGGTACA
TT
GATGAAGTTGCAGAAGACCCTGCAAAATCTCTTACAGAGATATCTACAGACTTTGACCGTTCTTCACC
A
CCACTCCAGCCTCCTCCTGTGAACTCACTGACCACCGAGAACAGATTCCACTCTTTACCATTCAGTCTC
ACC
AAGATGCCCAATACCAATGGAAGTATTGGCCACAGTCCACTTTCTCTGTCAGCCCAGTCTGTAATGG
AA
GAGCTAAACACTGCACCCGTCCAAGAGAGTCCACCCTTGGCCATGCCTCCTGGGAACTCACATGGTCT
A
GAAGTGGGCTCATTGGCTGAAGTTAAGGAGAACCCTCCTTTCTATGGGGTAATCCGTTGGATCGGTCAG
CCA
CCAGGACTGAATGAAGTGCTCGCTGGACTGGAACTGGAAGATGAGTGTGCAGGCTGTACGGATGGAA
CC
TTCAGAGGCACTCGGTATTTCACCTGTGCCCTGAAGAAGGCGCTGTTTGTGAAACTGAAGAGCTGCAG
G
CCTGACTCTAGGTTTGCATCATTGCAGCCGGTTTCCAATCAGATTGAGCGCTGTAACTCTTTAGCATTT
GGA
GGCTACTTAAGTGAAGTAGTAGAAGAAAATACTCCACCAAAAATGGAAAAAGAAGGCTTGGAGATAA
TG
ATTGGGAAGAAGAAAGGCATCCAGGGTCATTACAATTCTTGTTACTTAGACTCAACCTTATTCTGCTT
A
TTTGCTTTTAGTTCTGTTCTGGACACTGTGTTACTTAGACCCAAAGAAAAGAACGATGTAGAATATTAT
AGT
GAAACCCAAGAGCTACTGAGGACAGAAATTGTTAATCCTCTGAGAATATATGGATATGTGTGTGCCA
CA
AAAATTATGAAACTGAGGAAAATACTTGAAAAGGTGGAGGCTGCATCAGGATTTACCTCTGAAGAAAA
A
GATCCTGAGGAATTCTTGAATATTCTGTTTCATCATATTTTAAGGGTAGAACCTTTGCTAAAAATAAGA
TCA
GCAGGTCAAAAGGTACAAGATTGTTACTTCTATCAAATTTTTATGGAAAAAAATGAGAAAGTTGGCG
TT
CCCACAATTCAGCAGTTGTTAGAATGGTCTTTTATCAACAGTAACCTGAAATTTGCAGAGGCACCATC
A
TGTCTGATTATTCAGATGCCTCGATTTGGAAAAGACTTTAAACTATTTAAAAAAATTTTTCCTTCTCTG
GAA
TTAAATATAACAGATTTACTTGAAGACACTCCCAGACAGTGCCGGATATGTGGAGGGCTTGCAATGT
AT
GAGTGTAGAGAATGCTACGACGATCCGGACATCTCAGCTGGAAAAATCAAGCAGTTTTGTAAAACCTG
C
AACACTCAAGTCCACCTTCATCCGAAGAGGCTGAATCATAAATATAACCCAGTGTCACTTCCCAAAGAC
TTA
CCCGACTGGGACTGGAGACACGGCTGCATCCCTTGCCAGAATATGGAGTTATTTGCTGTTCTCTGCA
TA
GAAACAAGCCACTATGTTGCTTTTGTGAAGTATGGGAAGGACGATTCTGCCTGGCTCTTCTTTGACAG
C
ATGGCCGATCGGGATGGTGGTCAGAATGGCTTCAACATTCCTCAAGTCACCCCATGCCCAGAAGTAGGA
GAG
TACTTGAAGATGTCTCTGGAAGACCTGCATTCCTTGGACTCCAGGAGAATCCAAGGCTGTGCACGAA
GA
CTGCTTTGTGATGCATATATGTGCATGTACCAGAGTCCAACAATGAGTTTGTACAAATAA


Translation (953 aa):
MSSGLWSQEKVTSPYWEERIFYLLLQECSVTDKQTQKLLKVPKGSIGQYIQDRSVGHSRIPSAKGKKNQI
G
LKILEQPHAVLFVDEKDVVEINEKFTELLLAITNCEERFSLFKNRNRLSKGLQIDVGCPVKVQLRSGEE
K
FPGVVRFRGPLLAERTVSGIFFGVELL
EEGRGQGFTDGVYQGKQLFQCDEDCGVFVALDKLELIEDDDT
A
LESDYAGPGDTMQVELPPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDM
DNPIGNWDGRF
D
GVQLCSFACVESTILLHINDIIP
ESVTQERRPPKLAFMSRGVGDKGSSSHNKPKATGSTSDPGNRNRSE
L
FYTLNGSSVDSQPQSKSKNTWYIDE
VAEDPAKSLTEISTDFDRSSPPLQPPPVNSLTTENRFHSLPFSL
T
KMPNTNGSIGHSPLSLSAQSVMEELNTAPVQESPPLAMPPGNSHGLEVGSLAEVKENPPFYGVIRWIGQ
P
PGLNEVLAGLEL
EDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSRFASLQPVSNQIERCNSLAF
G
GYLSEVVEENTPPKMEKEGLEIMIGKKKGIQGHYNSCYLDSTLF
CLFAFSSVLDTVLLRPKEKNDVEYY
S
ETQELLRTEIVNPLR
IYGYVCATKIMKLRKILEKVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIR
S
AGQKVQDCYFYQIFMEKNEKVGVPTIQQLLEWSFINSNLKFAE
APSCLIIQMPRFGKDFKLFKKIFPSL
E
LNITDLLED
TPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLHPKRLNHKYNPVSLPKD
L
PDWDWRHGCIPCQNMELFAVLCIETSHYVAFVKYGKDDSAWLFFDSMADRD
GGQNGFNIPQVTPCPEVG
E
YLKMSLEDLHSLDSRRIQGCARRLLCDAYMCMYQSPTMSLYK




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser