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Report for CCDS5301.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5301.1 Public Homo sapiens 6 TTLL2 24 110 108 CCDS HistoryNCBI Gene:83887Re-query CCDS DB by CCDS ID:5301.1Re-query CCDS DB by GeneID:83887See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5301.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000239587.10 ENSP00000239587.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000239587.10Link to Ensembl Protein Viewer:ENSP00000239587.5Re-query CCDS DB by Nucleotide ID:ENST00000239587Re-query CCDS DB by Protein ID:ENSP00000239587
Original member Current member EBI ENST00000515138.1 ENSP00000424130.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000515138.1Link to Ensembl Protein Viewer:ENSP00000424130.1Re-query CCDS DB by Nucleotide ID:ENST00000515138Re-query CCDS DB by Protein ID:ENSP00000424130
Original member Current member NCBI NM_031949.5 NP_114155.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031949.5Link to Protein Sequence:NP_114155.4Re-query CCDS DB by Nucleotide ID:NM_031949Re-query CCDS DB by Protein ID:NP_114155Link to BLAST:NP_114155.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114155.4 592 Q9BWV7 592 100% 0 0

Chromosomal Locations for CCDS 5301.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 167325174 167325220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 167338647 167338803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 167340105 167341679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1779 nt):
ATGAGAGGGCGGGACCTGTGTTCCTCCACACAAAGCCAGGCGCTGGGATCTTTGAGAACCACCACCCCAG
CC
TTTACCCTTAACATTCCATCCGAGGCAAACCACACTGAGCAGCCGCCTGCAGGCCTGGGAGCAAGGCT
A
CAGGAAGCAGGTGTTTCCATCCCTCCCAGGCGAGGCCGCCCAACACCAACACTGGAGAAGAAGAAAAAA
CCT
CATTTGATGGCGGAAGATGAACCTTCAGGGGCCCTCTTGAAGCCGCTGGTTTTTCGCGTTGACGAGA
CC
ACCCCGGCTGTGGTGCAAAGCGTCCTCCTGGAGAGGGGGTGGAATAAGTTTGATAAGCAGGAGCAGAA
C
GCGGAGGACTGGAACCTGTACTGGAGGACATCCTCTTTCCGAATGACCGAACACAACAGTGTTAAACCG
TGG
CAGCAGCTAAACCACCACCCTGGAACCACCAAGCTTACCAGGAAAGACTGTTTGGCCAAACACCTGA
AG
CACATGAGGAGGATGTATGGCACTTCCCTGTACCAGTTCATCCCCCTGACGTTCGTCATGCCCAATGA
C
TATACCAAGTTCGTGGCTGAATACTTTCAGGAGAGGCAGATGCTGGGCACCAAGCATAGCTATTGGATT
TGC
AAGCCTGCTGAGTTATCTCGTGGGAGGGGGATACTAATTTTCAGTGACTTTAAAGACTTCATCTTTG
AT
GATATGTACATAGTGCAGAAATATATCTCCAATCCTTTACTTATTGGCAGATATAAATGTGATCTCCG
C
ATCTATGTTTGTGTTACTGGCTTTAAGCCTTTGACCATTTATGTTTATCAGGAAGGGTTGGTTCGGTTT
GCC
ACGGAAAAGTTTGACCTCAGTAATTTGCAAAACAATTATGCCCATTTGACCAACAGCAGCATCAATA
AA
TCCGGGGCCTCTTATGAGAAGATCAAAGAAGTGATTGGTCATGGTTGTAAATGGACGCTCAGCAGATT
T
TTTTCCTACCTTCGTAGCTGGGATGTGGACGATCTGCTTTTGTGGAAGAAAATCCACCGCATGGTTATT
CTC
ACCATTCTCGCCATTGCACCATCTGTCCCCTTTGCTGCCAATTGCTTTGAGCTCTTTGGGTTTGATA
TT
TTGATTGATGACAACTTGAAACCATGGCTTTTAGAGGTCAACTACAGCCCAGCCTTGACCTTGGATTG
T
TCAACAGATGTGTTGGTGAAGAGAAAACTTGTCCATGATATTATTGACCTGATTTACTTAAATGGTCTA
AGA
AATGAGGGGAGAGAAGCCAGTAATGCCACACATGGAAATTCCAACATCGACGCTGCAAAAAGTGACA
GA
GGTGGGCTTGATGCTCCTGACTGTCTTCCTTATGATTCTCTTTCGTTCACAAGCAGAATGTACAACGA
G
GATGACTCTGTGGTGGAGAAAGCTGTGAGTGTGCGTCCTGAAGCTGCACCTGCCTCCCAGCTGGAAGGA
GAG
ATGAGTGGGCAGGATTTTCATCTGTCAACAAGGGAGATGCCACAAAGCAAGCCCAAGTTACGGAGCA
GG
CACACGCCTCACAAGACACTCATGCCCTACGCGTCCCTCTTCCAGTCGCACTCCTGCAAGACCAAGAC
C
TCCCCGTGTGTCCTGTCAGACCGTGGCAAAGCTCCAGATCCCCAAGCAGGCAACTTTGTTCTTGTTTTT
CCT
TTCAATGAAGCAACTCTCGGAGCTTCCAGGAATGGATTAAATGTCAAAAGAATAATCCAAGAGCTCC
AG
AAACTAATGAATAAGCAACATTCCTAA


Translation (592 aa):
MRGRDLCSSTQSQALGSLRTTTPAFTLNIPSEANHTEQPPAGLGARLQEAGVSIPPRRGRPTPTLEKKKK
P
HLMAEDEPSGALLKPLVFRVDETTPAVVQSVLLERGWNKFDKQEQNAEDWNLYWRTSSFRMTEHNSVKP
W
QQLNHHPGTTKLTRKDCLAKHLKHMRRMYGTSLYQFIPLTFVMPNDYTKFVAEYFQERQMLGTKHSYWI
C
KPAELSRGRGILIFSDFKDFIFDDMYIVQKYISNPLLIGRYKCDLRIYVCVTGFKPLTIYVYQEGLVRF
A
TEKFDLSNLQNNYAHLTNSSINKSGASYEKIKEVIGHGCKWTLSRFFSYLRSWDVDDLLLWKKIHRMVI
L
TILAIAPSVPFAANCFELFGFDILIDDNLKPWLLEVNYSPALTLDCSTDVLVKRKLVHDIIDLIYLNGL
R
NEGREASNATHGNSNIDAAKSDRGGLDAPDCLPYDSLSFTSRMYNEDDSVVEKAVSVRPEAAPASQLEG
E
MSGQDFHLSTREMPQSKPKLRSRHTPHKTLMPYASLFQSHSCKTKTSPCVLSDRGKAPDPQAGNFVLVF
P
FNEATLGASRNGLNVKRIIQELQKLMNKQHS




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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