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Report for CCDS43991.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43991.1 Public Homo sapiens X DCAF12L2 24 110 108 CCDS HistoryNCBI Gene:340578Re-query CCDS DB by CCDS ID:43991.1Re-query CCDS DB by GeneID:340578See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43991.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360028.4 ENSP00000353128.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360028.4Link to Ensembl Protein Viewer:ENSP00000353128.2Re-query CCDS DB by Nucleotide ID:ENST00000360028Re-query CCDS DB by Protein ID:ENSP00000353128
Original member Current member NCBI NM_001013628.3 NP_001013650.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001013628.3Link to Protein Sequence:NP_001013650.1Re-query CCDS DB by Nucleotide ID:NM_001013628Re-query CCDS DB by Protein ID:NP_001013650Link to BLAST:NP_001013650.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013650.1 463 Q5VW00 463 100% 0 0

Chromosomal Locations for CCDS 43991.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 126164533 126165924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1392 nt):
ATGGCCCAGCAGCAAACAGGTAGCAGGAAACGGAAAGCGCCCGCGGTCGAGGCGGGAGCCGGGAGCTCGT
CG
TCGCAGGGTTTAGCGGCGGCGGACGGAGAGGGGCCTCTGCTACCCAAGAAGCAGAAGCGGCCGGCGAC
G
CGTCGCAGGCTGGTGCACTATCTGAAGGGCCGGGAGGTAGGAGCGCGGGGCCCAGCCGGGCTCCAGGGC
TTC
GAGGGCGAGCTGCGGGGCTACGCCGTCCAGAGGCTGCCCGAGCTGCTGACGGAGCGCCAGCTGGACC
TG
GGCACCCTCAACAAGGTGTTCGCGTCACAGTGGCTGAACGCCAGGCAGGTGGTGTGCGGCACCAAGTG
T
AATACGCTGTTTGTGGTGGACGTGCAGTCAGGCCACATCACGCGCATCCCCCTCATGCGGGACAAGGAG
GCC
GGGCTGGCCCAGGCCCACCAGGGCTGCGGCATCCATGCCATCGAGCTGAATCCCTCCAAGACGCTTC
TG
GCCACCGGCGGCGAAAACCCCAACAGCCTGGCCATCTACCAGCTGCCCACCCTGGACCCCCTGTGCCT
G
GGCGACCGCCATGGCCACAAGGACTGGATCTTCGCAGTCGCCTGGCTGAGTGACACCGTAGCTGTGAGC
GGC
TCCCGCGACGGCACCGTGGCTCTGTGGCGGATGGACCCAGACATGTTTAATGGCAGCATTGCCTGGC
AC
AGCGAGGTGGGTCTCCCAGTATATGCCCACATCCGTCCGAGGGATGTGGAGGCCATCCCCAGGGCCAG
C
ACCAACCCCAGCAACCGCAAGGTACGGGCCCTGGCCTTCAGCGGCAAGAACCAGGAGCTGGGAGCGGTG
TCC
TTGGACGGCTACTTCCACCTGTGGAAAGCCCGGAGCACACTATCCAGGCTCCTGTCCATCAGGCTGC
CC
TACTGCCGAGAGAATGTGTGCCTGACCTACTGTGATGAGTTGTCCCTGTACGCTGTGGGCTCTCAGTC
C
CACGTCTCCTTCCTGGATCCGCGCCAGCGCCAGCAGAACATCCGGCCCCTGTGCTCTCGAGAGGGTGGC
ACA
GGCGTGCGGTCGCTGAGCTTCTACCAGCACATCATCACTGTGGGCACCGGCCATGGTTCCCTGCTCT
TC
TATGACATCCGCGCCCAGAAGTTCCTGGAGGAGAGGGCCTCTTCCAGCCTGGACTCCATGCCGGGGCC
C
GCAGGGAGGAAGCTCAAGCTTGCCTGCGGCAGAGGCTGGCTCAACCAAGATGACGTCTGGGTGAACTAC
TTT
GGTGGCATGGGAGAGTTCCCCAATGCGCTCTACACCCACTGCTACAACTGGCCGGAGATGAAGCTCT
TT
GTGGCTGGGGGGCCTCTCCCTTCAGGCCTCCATGGGAACTACGCAGGCCTCTGGAGTTAA


Translation (463 aa):
MAQQQTGSRKRKAPAVEAGAGSSSSQGLAAADGEGPLLPKKQKRPATRRRLVHYLKGREVGARGPAGLQG
F
EGELRGYAVQRLPELLTERQLDLGTLNKVFASQWLNARQVVCGTKCNTLFVVDVQSGHITRIPLMRDKE
A
GLAQAHQGCGIHAIELNPSKTLLATGGENPNSLAIYQLPTLDPLCLGDRHGHKDWIFAVAWLSDTVAVS
G
SRDGTVALWRMDPDMFNGSIAWHSEVGLPVYAHIRPRDVEAIPRASTNPSNRKVRALAFSGKNQELGAV
S
LDGYFHLWKARSTLSRLLSIRLPYCRENVCLTYCDELSLYAVGSQSHVSFLDPRQRQQNIRPLCSREGG
T
GVRSLSFYQHIITVGTGHGSLLFYDIRAQKFLEERASSSLDSMPGPAGRKLKLACGRGWLNQDDVWVNY
F
GGMGEFPNALYTHCYNWPEMKLFVAGGPLPSGLHGNYAGLWS




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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