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Report for CCDS14178.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14178.1 Public Homo sapiens X TXLNG 24 110 108 CCDS HistoryNCBI Gene:55787Re-query CCDS DB by CCDS ID:14178.1Re-query CCDS DB by GeneID:55787See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14178.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380122.10 ENSP00000369465.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380122.10Link to Ensembl Protein Viewer:ENSP00000369465.5Re-query CCDS DB by Nucleotide ID:ENST00000380122Re-query CCDS DB by Protein ID:ENSP00000369465
Original member Current member NCBI NM_018360.3 NP_060830.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018360.3Link to Protein Sequence:NP_060830.2Re-query CCDS DB by Nucleotide ID:NM_018360Re-query CCDS DB by Protein ID:NP_060830Link to BLAST:NP_060830.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060830.2 528 Q9NUQ3-1 528 100% 0 0

Chromosomal Locations for CCDS 14178.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 16786488 16786589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 16818574 16818877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 16820164 16820255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 16828094 16828264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 16829576 16829770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 16832623 16832742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 16834283 16834357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 16837593 16837685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 16839821 16839916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 16841428 16841766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1587 nt):
ATGGCGACGCGGGTAGAGGAGGCAGCGCGGGGAAGAGGCGGCGGCGCCGAAGAGGCGACTGAGGCCGGAC
GGGGCGGACGGCGACGCAGCCCGCGGCAGAAGTTTGAAATTGGCACAATGGAAGAAGCTGGAATTTGTGG
GCTAGGGGTGAAAGCAGATATGTTGTGTAACTCTCAATCAAATGATATTCTTCAACATCAAGGCTCAAAT
TGTGGTGGCACAAGTAACAAGCATTCATTGGAAGAGGATGAAGGCAGTGACTTTATAACAGAGAACAGGA
ATTTGGTGAGCCCAGCATACTGCACGCAAGAATCAAGAGAGGAAATCCCTGGGGGAGAAGCTCGAACAGA
TCCCCCTGATGGTCAGCAAGATTCAGAGTGCAACAGGAACAAAGAAAAAACTTTAGGAAAAGAAGTTTTA
TTACTGATGCAAGCCCTAAACACCCTTTCAACCCCAGAGGAGAAGCTGGCAGCTCTCTGTAAGAAATATG
CTGATCTTCTGGAGGAGAGCAGGAGTGTTCAGAAGCAAATGAAGATCCTGCAGAAGAAGCAAGCCCAGAT
TGTGAAAGAGAAAGTTCACTTGCAGAGTGAACATAGCAAGGCTATCTTGGCAAGAAGCAAGCTAGAATCT
CTTTGCAGAGAACTTCAGCGTCACAATAAGACGTTAAAGGAGGAAAATATGCAGCAGGCACGAGAGGAAG
AAGAACGACGTAAAGAAGCAACTGCACATTTCCAGATTACCTTAAATGAAATTCAAGCCCAGCTGGAGCA
GCATGACATCCACAACGCCAAACTCCGACAGGAAAACATTGAGCTGGGGGAGAAGCTAAAGAAGCTCATC
GAACAGTACGCACTGAGGGAAGAGCACATTGATAAGGTGTTCAAACATAAGGAACTGCAACAGCAGCTCG
TGGATGCCAAACTGCAGCAAACGACACAACTGATAAAAGAAGCTGATGAAAAACATCAGAGAGAGAGAGA
GTTTTTATTAAAAGAAGCGACAGAATCGAGGCACAAATACGAACAAATGAAACAGCAAGAAGTACAACTA
AAACAGCAGCTTTCTCTTTATATGGATAAGTTTGAAGAATTCCAGACTACCATGGCAAAAAGCAATGAAC
TGTTTACAACCTTCAGACAGGAAATGGAAAAGATGACAAAGAAAATTAAAAAACTGGAAAAAGAAACAAT
AATTTGGCGTACCAAATGGGAAAACAATAATAAAGCACTTCTGCAAATGGCTGAAGAGAAAACAGTCCGT
GATAAAGAGTACAAGGCCCTTCAAATAAAACTGGAACGGTTAGAGAAGCTGTGCAGGGCTCTTCAGACAG
AAAGGAATGAGCTCAATGAGAAGGTGGAAGTCCTGAAAGAGCAGGTATCCATCAAAGCGGCCATCAAAGC
GGCGAACAGGGATTTAGCAACACCTGTGATGCAGCCCTGTACTGCCCTGGATTCTCACAAGGAGCTGAAC
ACTTCCTCGAAAAGAGCCCTGGGAGCGCACCTGGAGGCTGAGCCCAAGAGTCAGAGAAGCGCTGTGCAAA
AGCCCCCGTCCACAGGCTCTGCTCCGGCCATCGAGTCGGTTGACTAA

Translation (528 aa):
MATRVEEAARGRGGGAEEATEAGRGGRRRSPRQKFEIGTMEEAGICGLGVKADMLCNSQSNDILQHQGSN
CGGTSNKHSLEEDEGSDFITENRNLVSPAYCTQESREEIPGGEARTDPPDGQQDSECNRNKEKTLGKEVL
LLMQALNTLSTPEEKLAALCKKYADLLEESRSVQKQMKILQKKQAQIVKEKVHLQSEHSKAILARSKLES
LCRELQRHNKTLKEENMQQAREEEERRKEATAHFQITLNEIQAQLEQHDIHNAKLRQENIELGEKLKKLI
EQYALREEHIDKVFKHKELQQQLVDAKLQQTTQLIKEADEKHQREREFLLKEATESRHKYEQMKQQEVQL
KQQLSLYMDKFEEFQTTMAKSNELFTTFRQEMEKMTKKIKKLEKETIIWRTKWENNNKALLQMAEEKTVR
DKEYKALQIKLERLEKLCRALQTERNELNEKVEVLKEQVSIKAAIKAANRDLATPVMQPCTALDSHKELN
TSSKRALGAHLEAEPKSQRSAVQKPPSTGSAPAIESVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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