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Report for CCDS4265.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4265.1 Public Homo sapiens 5 RELL2 24 110 108 CCDS HistoryNCBI Gene:285613Re-query CCDS DB by CCDS ID:4265.1Re-query CCDS DB by GeneID:285613See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4265.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297164.8 ENSP00000297164.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000297164.8Link to Ensembl Protein Viewer:ENSP00000297164.3Re-query CCDS DB by Nucleotide ID:ENST00000297164Re-query CCDS DB by Protein ID:ENSP00000297164
Original member Current member EBI ENST00000444782.5 ENSP00000409443.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000444782.5Link to Ensembl Protein Viewer:ENSP00000409443.1Re-query CCDS DB by Nucleotide ID:ENST00000444782Re-query CCDS DB by Protein ID:ENSP00000409443
Original member Current member NCBI NM_001130029.2 NP_001123501.1 Accepted alive Link to Nucleotide Sequence:NM_001130029.2Link to Protein Sequence:NP_001123501.1Re-query CCDS DB by Nucleotide ID:NM_001130029Re-query CCDS DB by Protein ID:NP_001123501Link to BLAST:NP_001123501.1
Original member Current member NCBI NM_173828.5 NP_776189.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173828.5Link to Protein Sequence:NP_776189.3Re-query CCDS DB by Nucleotide ID:NM_173828Re-query CCDS DB by Protein ID:NP_776189Link to BLAST:NP_776189.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123501.1 303 Q8NC24 303 100% 0 0
NP_776189.3 303 Q8NC24 303 100% 0 0

Chromosomal Locations for CCDS 4265.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141638226 141638409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141638795 141638860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141638955 141639021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141639464 141639649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141639920 141640295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141640412 141640444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (912 nt):
ATGTCGGAACCACAGCCTGACCTGGAACCGCCCCAACATGGGCTATATATGCTCTTCCTGCTTGTGCTGG
TC
TTCTTCCTCATGGGCCTGGTAGGCTTCATGATCTGCCACGTGCTCAAGAAGAAGGGCTACCGCTGCCG
C
ACGTCGAGGGGCTCTGAGCCTGACGATGCCCAGCTTCAGCCCCCTGAGGACGATGACATGAATGAGGAC
ACA
GTAGAGAGGATTGTTCGCTGCATCATCCAGAATGAAGCCAATGCTGAGGCCTTGAAGGAGATGCTGG
GG
GACAGTGAAGGAGAAGGGACAGTGCAGCTGTCCAGTGTGGATGCCACCTCCAGCCTGCAGGACGGAGC
C
CCCTCCCATCATCACACAGTGCACCTGGGCTCTGCAGCCCCTTGCCTCCATTGCAGCCGCAGCAAGAGG
CCT
CCACTTGTCCGTCAGGGACGCTCCAAGGAAGGAAAAAGCCGCCCCCGGACAGGGGAGACCACTGTGT
TC
TCTGTGGGCAGGTTCCGGGTGACACACATTGAGAAGCGCTATGGACTGCACGAACACCGTGATGGCTC
C
CCCACAGACAGGAGCTGGGGCTCTGGTGGGGGACAGGACCCAGGGGGTGGTCAGGGGTCTGGGGGAGGG
CAG
CCCAAGGCAGGGATGCCTGCCATGGAGAGGCTGCCCCCTGAGAGGCCACAGCCCCAGGTCCTAGCCA
GC
CCCCCAGTACAGAATGGAGGACTCAGGGACAGCAGCCTAACCCCTCGTGCACTTGAAGGGAACCCCAG
A
GCTTCTGCAGAGCCAACACTGAGGGCCGGAGGGAGGGGCCCAAGCCCAGGGCTGCCCACTCAAGAGGCA
AAT
GGGCAGCCAAGCAAACCAGACACTTCTGATCACCAGGTGTCTCTACCACAGGGAGCAGGGAGTATGT
GA


Translation (303 aa):
MSEPQPDLEPPQHGLYMLFLLVLVFFLMGLVGFMICHVLKKKGYRCRTSRGSEPDDAQLQPPEDDDMNED
T
VERIVRCIIQNE
ANAEALKEMLGDSEGEGTVQLSSVDATSSLQDGAPSHHHTVHLGSAAPCLHCSRSKR
P
PLVRQGRSKEGKSRPRTGETTVFSVG
RFRVTHIEKRYGLHEHRDGSPTDRSWGSGGGQDPGGGQGSGGG
Q
PKAGMPAMERLPPERPQPQVLASPPVQNGGLRDSSLTPRALEGNPRASAEPTLRAGGRGPSPGLPTQEA
N
GQPSKPDTSDHQ
VSLPQGAGSM



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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