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Report for CCDS54685.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54685.1 Public Homo sapiens 3 HTR3D 24 110 108 CCDS HistoryNCBI Gene:200909Re-query CCDS DB by CCDS ID:54685.1Re-query CCDS DB by GeneID:200909See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54685.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382489.3 ENSP00000371929.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000382489.3Link to Ensembl Protein Viewer:ENSP00000371929.3Re-query CCDS DB by Nucleotide ID:ENST00000382489Re-query CCDS DB by Protein ID:ENSP00000371929
Original member Current member NCBI NM_001163646.2 NP_001157118.1 Accepted alive Link to Nucleotide Sequence:NM_001163646.2Link to Protein Sequence:NP_001157118.1Re-query CCDS DB by Nucleotide ID:NM_001163646Re-query CCDS DB by Protein ID:NP_001157118Link to BLAST:NP_001157118.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157118.1 454 Q70Z44-1 454 100% 0 0

Chromosomal Locations for CCDS 54685.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 184032831 184033057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184035166 184035195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184035978 184036100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184036375 184036505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184036748 184036896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184038021 184038239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184038369 184038624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184038746 184038975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1365 nt):
ATGCAGAAACACTCTCCAGGCCCCCCAGCCCTGGCCCTCCTCTCTCAGTCTCTGCTCACTACAGGAAATG
GCGACACTTTGATTATCAATTGCCCAGGCTTTGGCCAGCACAGGGTGGACCCTGCAGCCTTTCAAGCAGT
GTTTGACAGAAAGGCTATTGGTCCAGTCACCAACTACAGTGTCGCCACTCATGTCAACATCTCCTTCACC
TTGTCTGCCATCTGGAACTGCTATTCCAGGATTCACACCTTCAACTGCCACCATGCCCGGCCTTGGCACA
ATCAATTTGTGCAGTGGAACCCAGATGAATGCGGAGGCATCAAGAAGTCCGGCATGGCAACTGAGAACCT
ATGGCTTTCAGATGTCTTCATCGAGGAGTCTGTGGATCAGACACCTGCAGGTCTCATGGCTAGTATGTCA
ATAGTGAAGGCCACATCAAACACAATAAGCCAATGTGGGTGGTCAGCATCTGCAAACTGGACACCTTCTA
TTTCCCCTTCCATGGACAGAGCCCGGGCATGGAGAAGGATGTCCAGGAGCTTTCAAATACATCACAGAAC
CTCATTCAGAACAAGGAGGGAGTGGGTACTGCTGGGTATCCAAAAAAGAACAATAAAGGTGACCGTGGCC
ACTAACCAGTATGAACAAGCCATCTTCCATGTGGCCATCAGGCGCAGGTGCAGGCCCAGCCCCTACGTGG
TAAACTTTCTGGTGCCCAGTGGCATTCTGATTGCCATCGATGCCCTCAGTTTCTACCTGCCACTGGAAAG
TGGGAATTGTGCCCCATTCAAGATGACTGTTCTGCTGGGCTACAGCGTCTTCCTGCTCATGATGAATGAC
TTGCTCCCAGCCACTAGCACTTCATCACATGCTTCACTAGTGGCGCCTCTGGCCCTCATGCAGACCCCCT
TGCCTGCAGGTGTCTACTTCGCCCTGTGCCTGTCCCTGATGGTGGGCAGCCTGCTGGAGACCATCTTCAT
CACCCACCTGCTGCACGTGGCCACCACCCAGCCCCTACCTCTGCCTCGGTGGCTCCACTCCCTGCTGCTG
CACTGCACCGGCCAAGGGAGATGCTGTCCCACTGCGCCCCAGAAGGGAAATAAGGGCCCGGGTCTCACCC
CCACCCACCTGCCCGGTGTGAAGGAGCCAGAGGTATCAGCAGGGCAGATGCCAGGCCCTGGGGAGGCAGA
GCTGACAGGGGGCTCAGAATGGACAAGGGCCCAGCGGGAACACGAGGCCCAGAAGCAGCACTCGGTGGAG
CTGTGGGTGCAGTTCAGCCACGCGATGGACGCCCTGCTCTTCCGCCTCTACCTGCTCTTCATGGCCTCCT
CCATCATCACCGTCATATGCCTCTGGAACACCTAG

Translation (454 aa):
MQKHSPGPPALALLSQSLLTTGNGDTLIINCPGFGQHRVDPAAFQAVFDRKAIGPVTNYSVATHVNISFT
LSAIWNCYSRIHTFNCHHARPWHNQFVQWNPDECGGIKKSGMATENLWLSDVFIEESVDQTPAGLMASMS
IVKATSNTISQCGWSASANWTPSISPSMDRARAWRRMSRSFQIHHRTSFRTRREWVLLGIQKRTIKVTVA
TNQYEQAIFHVAIRRRCRPSPYVVNFLVPSGILIAIDALSFYLPLESGNCAPFKMTVLLGYSVFLLMMND
LLPATSTSSHASLVAPLALMQTPLPAGVYFALCLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLL
HCTGQGRCCPTAPQKGNKGPGLTPTHLPGVKEPEVSAGQMPGPGEAELTGGSEWTRAQREHEAQKQHSVE
LWVQFSHAMDALLFRLYLLFMASSIITVICLWNT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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