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Report for CCDS12.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12.2 Public Homo sapiens 1 SDF4 24 110 108 CCDS HistoryNCBI Gene:51150Re-query CCDS DB by CCDS ID:12.2Re-query CCDS DB by GeneID:51150See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 12.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263741.12 ENSP00000263741.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000263741.12Link to Ensembl Protein Viewer:ENSP00000263741.8Re-query CCDS DB by Nucleotide ID:ENST00000263741Re-query CCDS DB by Protein ID:ENSP00000263741
Original member Current member NCBI NM_016547.3 NP_057631.2 Accepted alive Link to Nucleotide Sequence:NM_016547.3Link to Protein Sequence:NP_057631.2Re-query CCDS DB by Nucleotide ID:NM_016547Re-query CCDS DB by Protein ID:NP_057631Link to BLAST:NP_057631.2

Chromosomal Locations for CCDS 12.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 1217670 1217804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1218458 1218633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1218769 1218927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1223244 1223357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1223832 1223968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1228468 1228772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGGCGTCCAGGTGGGGTCCCCTCATTGGCCTGGCTCCGTGCTGCCTCTGGCTCCTGGGGGCAGTCCTTC
TGATGGACGCGTCTGCACGGCCTGCCAACCACTCGTCCACTCGAGAGAGAGTAGCCAACAGGGAGGAGAA
TGAGATCCTGCCCCCAGACCACCTGAACGGGGTGAAGCTGGAGATGGACGGGCACCTCAATCGCGGCTTC
CACCAGGAGGTCTTCCTAGGCAAGGACCTGGGTGGCTTTGATGAGGACGCGGAGCCGCGGCGGAGCCGGA
GGAAGCTGATGGTCATCTTTTCCAAGGTGGATGTGAACACTGACCGGAAGATCAGTGCCAAGGAGATGCA
GCGCTGGATCATGGAGAAGACGGCCGAGCACTTCCAGGAGGCCATGGAGGAGAGCAAGACACACTTCCGC
GCCGTGGACCCTGACGGGGACGGTCACGTGTCTTGGGACGAGTATAAGGTGAAGTTTTTGGCGAGTAAAG
GCCATAGCGAGAAGGAGGTTGCCGACGCCATCAGGCTCAACGAGGAACTCAAAGTGGATGAGGAAACACA
GGAAGTCCTGGAGAACCTGAAGGACCGCTGGTACCAGGCGGACAGCCCCCCTGCAGACCTGCTGCTGACG
GAGGAGGAGTTCCTGTCGTTCCTCCACCCCGAGCACAGCCGGGGAATGCTCAGGTTCATGGTGAAGGAGA
TCGTCCGGGACCTGGACCAGGACGGTGACAAGCAGCTCTCTGTGCCCGAGTTCATCTCCCTGCCCGTGGG
CACCGTGGAGAACCAGCAGGGCCAGGACATTGACGACAACTGGGTGAAAGACAGAAAAAAGGAGTTTGAG
GAGCTCATTGACTCCAACCACGACGGCATCGTGACCGCCGAGGAGCTGGAGAACGTGCCCACACTCCCGC
TGCAGCCAATAGGCACCTTAAATAGCCACTTCGTGCGGCTGGCCGCGGAGCTCGGAGGGGGAAAGGCGAC
GCTGACCTGTGCCCCGCTCGCCCGCAGAGCTACATGGACCCCATGA

Translation (341 aa):
MASRWGPLIGLAPCCLWLLGAVLLMDASARPANHSSTRERVANREENEILPPDHLNGVKLEMDGHLNRGF
HQEVFLGKDLGGFDEDAEPRRSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFR
AVDPDGDGHVSWDEYKVKFLASKGHSEKEVADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLT
EEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFE
ELIDSNHDGIVTAEELENVPTLPLQPIGTLNSHFVRLAAELGGGKATLTCAPLARRATWTP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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