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Report for CCDS72455.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72455.1 Public Mus musculus X Shroom2 23 108 98 CCDS HistoryNCBI Gene:110380Re-query CCDS DB by CCDS ID:72455.1Re-query CCDS DB by GeneID:110380See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72455.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062317.4 ENSMUSP00000057500.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062317.4Link to Ensembl Protein Viewer:ENSMUSP00000057500.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000062317Re-query CCDS DB by Protein ID:ENSMUSP00000057500
Original member Current member NCBI NM_001290684.1 NP_001277613.1 Accepted alive Link to Nucleotide Sequence:NM_001290684.1Link to Protein Sequence:NP_001277613.1Re-query CCDS DB by Nucleotide ID:NM_001290684Re-query CCDS DB by Protein ID:NP_001277613Link to BLAST:NP_001277613.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277613.1 1481 A2ALU4-1 1481 100% 0 0

Chromosomal Locations for CCDS 72455.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 152612528 152612794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152613395 152613667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152617193 152617355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152618901 152619446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152623126 152623317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152657424 152657524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152659264 152661718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152673532 152673663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152695640 152695791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152769286 152769450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4446 nt):
ATGGAGGGCGCCGAGCCCCGTGCACGGCCCGAGCGCCTGGCCGAAGCTGAGGCGCCGGCGACCGACGGCG
TCCGCCTGGTGGAGGTGCAGCTGAGCGGCGGCGCCCCTTGGGGCTTCACCTTGAAGGGCGGCCGCGAGCA
TGGCGAGCCTCTGGTCATCACCAAGATTGAAGAAGGAAGCAAAGCTGCAGCAGTGGACAAGCTACTTGCT
GGAGATGAGATAGTGGCCATTAATGATGTGAGTCTCTCAGGGTTCAGACAAGAAGCAATTTGCCTGGTGA
AAGGCTCCCACAAGACCCTGAAGCTTGTGGTCAAAAGGAAAAGTGATCCAAGTTGGAGGCCCCACTCCTG
GCACGCTACCAAGTACTTTGATGTCCACCCTGAGCCAGCAGCCTCACTGTTTCTGAACACCAGCGGTTCC
CCTTCCTGGAAGAGCCAGCACCAGGCTAGTTCTTCCTCTCATGATTTATCTGGCTCATGGGAGCATACAA
GCCTACAGCGCACTTCTGACCACTTCAGCTCCATGGGCAGCATAGACAGCCTCGACCACAGCTCCCAACT
CTACCCATCTGGACACCTCTCATCTGCCAAGTCCAATAGCAGCATTGACCACCTGGGAGGCCACAGCAAG
CGAGACTCAGCTTACGGCTCCTTTTCCACATGCTCCAGCACCCCTGACCACACCTTGCCCAAGGCTGATG
CCTCTTCCACTGAGAACATTCTCTATAAAGTTGGCCTTTGGGAGGCCTCCAGACCAGGCAGCAGCCGACA
AAGCCAGTCTACAGGTGATCCTCAGGGACTGCAGGACAGGCCATCATGTTTCATACCTAGGGTTCCTGGT
AACAGTAGTAAAAGTCCAAGGCCGGAGGATAATGTTGAACCCAAAATAGCCACTCATGGGAGATCCAATT
TTGGGCCTGTGTGGTATGTTCCTGACAAGAAAAAAGCCCCTTCTCCCCCACCTCTTGGACTTCCTTTGCG
CAGTGATAGCTTTTCTGTGGCAGCCAGGGGCCATGAAAAAGCCCGGGGCCCTCCATTCTCAGACTTGGCC
AGTATGCAGCACTTTATCACCCTGCCCCATGTGCAACCCCGGGGGGACCATAGAATGGAAACTACAGATC
GTCAGTGGAAGCTCACACACCTAAGCAGTGGAAAAGAAATAGGAAATGTGGGTTACCAGTCAGAAGGCCA
CCTGGATTGCCGTTGGCTATGCTCTGATGATAGAGCAGGTAGGCCCTCAGGGCCTCCGGGCAGGCTCCAG
TTCTCCGATGTGCACTTTCTGAAGTCTTACCACGGGAGCCAGCACCAACAGCAGTGCAGTGACGAGAGCC
CAAGGGCCCCCTCATCACCAAGGGAACTGCTTCATATAACTCCTGGTGGCGGTCTGCAAGAGCCTCCTGA
ACCATCTCAGGATGACAACCCTACTCAGGTGAGGTGGCCTGGTTCTGCTCACCAGAAGCTAGATGACAGA
GGGCGGAGCCACTATTTTCCTGGGTCCCTCAGGCAGCCTGTACAGGGGAGTGCCCAGGTTGTGATACCCC
GAGGTGACTATTGGCATTCAGATACAACTCCTGTGGACCTTGAATATCCTCTCTTACGCCCAGTAGGACA
GAGGACCTACCTACAGCAGCATGAGGAGACTCCGGCCTCTCATGAAAAAGAGGGGTATCACCAGCTAAAT
GCAGGGATTGAAGGCTGCTGCTCTGGAATCCAAGAGCCTCCTAGAGCCAGCCGCACTGTGAGAACTGGTC
TGCAGTGTCCTAGCAATGACTTCAAATTAGTGGATGGAGAGAGTGGGAGAATTTCTCGTCAGAGGACACC
CATGCTGCATTCTCTGACCCAAGATGGTACATGGAGACCCGGGAACAGCAAGGATTGTGGAAATGATAAG
CCACCACTGTTTGATGCCCAGGTGGGTAAACCCACACGGAGGAGTGACCGTTTTGCCACAACACTGAGGA
ATGAGATCCAAATGCGTAGAGCAAAGCTGCAGAAGAGCAAAAGTACAGTGACACTAGCTGGAGACAGTGA
AGCTGAAGATTGTGCTGGAGACTGGAGAGCTGATGTGGGGGCTGTCCCAGAAGGTTCCTTCCCCAGCACC
TATAAAGAGCACCTGAAGGAGGCCCAGACACGTGTTCTGAAGGCCACCTCTTTCCAACGCCGAGATTTAG
ATCCCACCCCAGCAGATCAGTATTCAGGACCATCAGAACACAGGACTTTTGACCACAGTGCCTCATCTTC
TTTATCTTCTTTCCCTGGGGAGCCAGACTCTGCCCCACGCTTCTGTGAGACAGGTCTGGCCAAGGCACCC
TCTTCTGGAGTTGGTGTACCCCACGTTCTTCGAATTGGAGGCCGGAAACGGTTCACAGCAGAGCAGAAAC
TAAAGTCCTATTCTGAGCCAGAGAAAATAAATGAAGTGGGGCTCTCAGGGGACCACCGTCCTCATCCTAC
TGTCAGGACACCTGAGGATACAGTGGGTACATTTGCTGACAGGTGGAAGTTTTTTGAGGAAACAAGCAAA
TCTCTTCTCCAGAAGGCAGGCCATAGGCAAGTTCACTGTGGGCTCCCTAGAGAGAAGGCTGAGAGGCCAC
AGACAGGGCACCATGAATGTGAGAGTACAGAGCCCTGGTTCCAGAAGAGGTCACTGGCCACCTCCTGCGG
AGAGATCCTCAGTGATAGAAAAGTAGAAAAGGCCTCAGAGAAATTGAACCCACCCAGAAGGCTTGGAACC
TTCGCAGAATATCAAGCATCTTGGAAGGAACAGAAGAAACCTCTGGAAGCCAGGAGTTCTGGACGATACC
ATTCAGCAGATGATATTCTGGATGCTGGTCTAGATCAGCAGCAGAGGCCACAGTACATTCATGAGCGGTC
TCGTTCATCACCGTCCACAGATCACTACTCACAGGAAGTGCCTGTTGAACCAAACAGGCAGGCAGAGGAC
TCTGGTGACCACAAAGAAGCAATTCTCTGTACACTACAAGCTGAGGAGGGATGCTCTGCTCCAAGTGCCC
AGCCGCAAGACAGCCAGCATGTGAATGAAGACACAACTTTCCCTCAACCAGAAACCCAGCTCTCTTCCAA
GTGTCAACACCTACAGACGTCAGCCATGGAAACTTCTCGCTCCCCTTCGCCTCAGTTTGCCCCACAGAAG
CTGACAGATAAACCTCCCCTGCTTATCCATGAAGACAACTCAGCAAGAATCGAGCGGGTGATGGACAACA
ACACCACTGTGAAGATGGTGCCCATAAAAATTGTGCACTCAGAAAGCCAGCCCGAGAAGGAGAGTCGTCA
GAGTCTCGCGTGCCCAGCTGAGCTGCCCCCACTGCCCAGTGGGCTGGAGAGGGACCAGATCAAGACACTG
AGTACATCAGAGCAATGCTACTCCCGCTTCTGTGTGTACACACGACAGGAGGTGGAAGCTCCTCATAGAG
CCCGCCCTCCAGAGCCCCGGCCACCCAGCACGCCTGCACCTCCTGTCAGAGATAGCTGTTCCTCCCCTCC
CTCACTCAACTATGGGAAGGCCAAGGAGAAAACCATGGATGACTTGAAGTCTGAAGAATTAGCCAGGGAG
ATTGTGGGAAAGGACAAGTCTTTGGCTGACATCCTGGACCCCAGTGTGAAGATCAAAACTACCATGGATC
TGATGGAGGGAATTTTTCCCAAAGATGAGTACCTCCTAGAGGAAGCTCAGCAGCGGAGAAAGCTGCTCCC
CAAAGTCCCCTTACCCAGAGTCACAGAGGACAAGAAACAGGACCCAGGTATGCCAGGGGTTGTGTCCTTG
GCCACCAATTCTACCTATTACAGCACATCAGCCCCCAAAGCAGAGCTTCTTATCAAGATGAAGGACCTGC
AGGAGCCTGAAGAGTATTCAGCAGGTGACTTGGATCATGACCTTTCTGTTAAGAAGCAAGAGCTCATTGA
CAGTATCAGCCGCAAGCTGCAGGTGCTCCGGGAAGCACGTGAGAGCCTGCTGGAAGACATCCAAGCCAAC
AATGCTCTTGGGGATGAGGTGGAAGCCATTGTGAAAGATGTCTGCAAGCCCAATGAGTTTGACAAGTTCC
GGATGTTCATTGGAGACCTGGACAAAGTGGTGAACCTCCTGCTGTCACTGTCAGGACGCCTGGCCCGTGT
GGAAAATGCCCTTAATAATTTAGATGACAATCCTTCTCCTGGAGATCGGCAGTCACTGTTGGAGAAACAG
AGAGTCCTAACTCAGCAGCACGAGGATGCCAAGGAGCTTAAAGAGAACCTGGACCGCCGTGAGCGCATTG
TGTTCGACATCCTGGCTACCTACCTCAGCGAGGAGAACCTGGCTGACTATGAGCACTTCGTGAAGATGAA
GTCAGCTCTCATCATTGAGCAGCGAGAGCTGGAAGATAAAATCCACCTGGGTGAAGAGCAGCTCAAGTGT
TTGTTTGACAGCCTACAGCCTGAGAGAAGCAAATGA

Translation (1481 aa):
MEGAEPRARPERLAEAEAPATDGVRLVEVQLSGGAPWGFTLKGGREHGEPLVITKIEEGSKAAAVDKLLA
GDEIVAINDVSLSGFRQEAICLVKGSHKTLKLVVKRKSDPSWRPHSWHATKYFDVHPEPAASLFLNTSGS
PSWKSQHQASSSSHDLSGSWEHTSLQRTSDHFSSMGSIDSLDHSSQLYPSGHLSSAKSNSSIDHLGGHSK
RDSAYGSFSTCSSTPDHTLPKADASSTENILYKVGLWEASRPGSSRQSQSTGDPQGLQDRPSCFIPRVPG
NSSKSPRPEDNVEPKIATHGRSNFGPVWYVPDKKKAPSPPPLGLPLRSDSFSVAARGHEKARGPPFSDLA
SMQHFITLPHVQPRGDHRMETTDRQWKLTHLSSGKEIGNVGYQSEGHLDCRWLCSDDRAGRPSGPPGRLQ
FSDVHFLKSYHGSQHQQQCSDESPRAPSSPRELLHITPGGGLQEPPEPSQDDNPTQVRWPGSAHQKLDDR
GRSHYFPGSLRQPVQGSAQVVIPRGDYWHSDTTPVDLEYPLLRPVGQRTYLQQHEETPASHEKEGYHQLN
AGIEGCCSGIQEPPRASRTVRTGLQCPSNDFKLVDGESGRISRQRTPMLHSLTQDGTWRPGNSKDCGNDK
PPLFDAQVGKPTRRSDRFATTLRNEIQMRRAKLQKSKSTVTLAGDSEAEDCAGDWRADVGAVPEGSFPST
YKEHLKEAQTRVLKATSFQRRDLDPTPADQYSGPSEHRTFDHSASSSLSSFPGEPDSAPRFCETGLAKAP
SSGVGVPHVLRIGGRKRFTAEQKLKSYSEPEKINEVGLSGDHRPHPTVRTPEDTVGTFADRWKFFEETSK
SLLQKAGHRQVHCGLPREKAERPQTGHHECESTEPWFQKRSLATSCGEILSDRKVEKASEKLNPPRRLGT
FAEYQASWKEQKKPLEARSSGRYHSADDILDAGLDQQQRPQYIHERSRSSPSTDHYSQEVPVEPNRQAED
SGDHKEAILCTLQAEEGCSAPSAQPQDSQHVNEDTTFPQPETQLSSKCQHLQTSAMETSRSPSPQFAPQK
LTDKPPLLIHEDNSARIERVMDNNTTVKMVPIKIVHSESQPEKESRQSLACPAELPPLPSGLERDQIKTL
STSEQCYSRFCVYTRQEVEAPHRARPPEPRPPSTPAPPVRDSCSSPPSLNYGKAKEKTMDDLKSEELARE
IVGKDKSLADILDPSVKIKTTMDLMEGIFPKDEYLLEEAQQRRKLLPKVPLPRVTEDKKQDPGMPGVVSL
ATNSTYYSTSAPKAELLIKMKDLQEPEEYSAGDLDHDLSVKKQELIDSISRKLQVLREARESLLEDIQAN
NALGDEVEAIVKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNNLDDNPSPGDRQSLLEKQ
RVLTQQHEDAKELKENLDRRERIVFDILATYLSEENLADYEHFVKMKSALIIEQRELEDKIHLGEEQLKC
LFDSLQPERSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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