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Report for CCDS90629.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90629.1 Public Mus musculus 9 Mlip 23 108 98 CCDS HistoryNCBI Gene:69642Re-query CCDS DB by CCDS ID:90629.1Re-query CCDS DB by GeneID:69642See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90629.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000184848.7 ENSMUSP00000139242.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000184848.7Link to Ensembl Protein Viewer:ENSMUSP00000139242.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000184848Re-query CCDS DB by Protein ID:ENSMUSP00000139242
Original member Current member NCBI NM_001368988.1 NP_001355917.1 Accepted alive Link to Nucleotide Sequence:NM_001368988.1Link to Protein Sequence:NP_001355917.1Re-query CCDS DB by Nucleotide ID:NM_001368988Re-query CCDS DB by Protein ID:NP_001355917Link to BLAST:NP_001355917.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001355917.1 227 Q5FW52-2 227 100% 0 0

Chromosomal Locations for CCDS 90629.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 77102391 77102393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77164765 77164893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77173959 77174003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77181352 77181396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77239392 77239784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77347695 77347763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGGAATTTGGAAAGCATGAACCAGGAAGCTCACTAAAGAGGAACAAGAACTTAGAGGAGGGAGTGACGT
TTGAGTACAGTGATCATATGACCTTCAGCTCTGAGAGCAAACAAGAGAGGGTCCAGAGGATACTGGATTA
TCCGTCAGAGGTCAGTGGGAGGAATTCACAACAAAAGGAATTCAATACAAAGGAACCTCAAGGAATGCAG
AAAGGTGATCTCTTCAAAGCAGAATATGTTTTTATTGTGGATTCTGATGGGGAAGATGAAGCTACATGCA
GACAAGGTGAACAAGGCCCCCCAGGGGGACCAGGCAACATAGCTACTCGGCCCAAGTCTCTGGCTATTTC
TTCTAGTCTGGCTTCTGACGTGGTGCGTCCCAAAGTACGAGGGGCTGATCTCAAGACCTCATCACATCCT
GAAATTCCTCATGGGATAGCCCCTCAGCAAAAGCATGGGCTGACTCCTACAACTCATCCAAGAGCAGCTG
GTCGAGAAACCAAATACGCAAATCTTTCTTCATCATCCTCAACAGCGTCTGAGAGCCAACTGACTAAGCC
TGGAGTAATTCGTCCAGTACCTGTAAAATCCAAACTACTCCTGAGAAAGGATGAAGAAGTTTATGAGCCC
AACCCTTTCAGTAAATACCTTGAAGACAACAGTGGCCTGTTTTCTGAGCAGTAA

Translation (227 aa):
MEFGKHEPGSSLKRNKNLEEGVTFEYSDHMTFSSESKQERVQRILDYPSEVSGRNSQQKEFNTKEPQGMQ
KGDLFKAEYVFIVDSDGEDEATCRQGEQGPPGGPGNIATRPKSLAISSSLASDVVRPKVRGADLKTSSHP
EIPHGIAPQQKHGLTPTTHPRAAGRETKYANLSSSSSTASESQLTKPGVIRPVPVKSKLLLRKDEEVYEP
NPFSKYLEDNSGLFSEQ


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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