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Report for CCDS40617.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40617.1 Public Mus musculus 9 Ncam1 23 108 98 CCDS HistoryNCBI Gene:17967Re-query CCDS DB by CCDS ID:40617.1Re-query CCDS DB by GeneID:17967See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40617.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000193547.5 ENSMUSP00000142275.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000193547.5Link to Ensembl Protein Viewer:ENSMUSP00000142275.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000193547Re-query CCDS DB by Protein ID:ENSMUSP00000142275
Original member NCBI NM_001081445.1 NP_001074914.1 Updated not alive Link to Nucleotide Sequence:NM_001081445.1Link to Protein Sequence:NP_001074914.1Re-query CCDS DB by Nucleotide ID:NM_001081445Re-query CCDS DB by Protein ID:NP_001074914
Current member NCBI NM_001081445.2 NP_001074914.1 Accepted alive Link to Nucleotide Sequence:NM_001081445.2Link to Protein Sequence:NP_001074914.1Re-query CCDS DB by Nucleotide ID:NM_001081445Re-query CCDS DB by Protein ID:NP_001074914Link to BLAST:NP_001074914.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074914.1 848 P13595-2 848 99.8821% 0 1

Chromosomal Locations for CCDS 40617.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 49505443 49505563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49508589 49508705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49509705 49509912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49520035 49520212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49523522 49523646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49543011 49543142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49544651 49544821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49545153 49545249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49545599 49545783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49546158 49546308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49557096 49557238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49564869 49565041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49565469 49565586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49566675 49566812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49567337 49567480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49568331 49568549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49569826 49569900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49798678 49798729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2547 nt):
ATGCTGCGAACTAAGGATCTCATCTGGACTTTGTTTTTCCTGGGAACTGCAGTTTCCCTGCAGGTAGATA
TTGTTCCCAGCCAAGGAGAAATCAGCGTTGGAGAGTCCAAATTCTTCCTGTGTCAAGTGGCAGGAGATGC
CAAAGATAAGGACATCTCCTGGTTCTCCCCCAATGGGGAGAAGCTGAGCCCAAACCAGCAGCGGATCTCA
GTGGTGTGGAATGATGACGACTCCTCTACCCTCACCATCTACAACGCCAACATCGACGATGCCGGCATAT
ACAAGTGTGTGGTCACGGCTGAGGACGGCACCCAGTCTGAGGCCACTGTCAACGTGAAGATCTTCCAGAA
GCTCATGTTCAAGAATGCACCAACCCCACAGGAGTTTAAGGAAGGGGAGGATGCTGTGATTGTCTGTGAT
GTGGTCAGCTCCCTGCCTCCAACCATCATCTGGAAACACAAAGGCCGAGATGTCATTCTGAAAAAAGACG
TCCGGTTCATAGTCCTGTCCAACAACTACCTGCAGATCAGGGGCATCAAGAAAACAGATGAGGGTACTTA
CCGCTGTGAGGGCAGGATCCTGGCCCGCGGGGAAATCAACTTCAAGGACATTCAGGTCATTGTGAATGTA
CCACCCACTGTCCAGGCCAGACAGAGCATCGTGAATGCCACTGCCAACCTGGGCCAGTCTGTCACCCTGG
TGTGTGATGCCGATGGCTTCCCAGAGCCCACCATGAGCTGGACAAAGGATGGGGAACCCATAGAGAACGA
GGAGGAAGATGACGAGAAGCACATCTTCAGTGATGACAGCTCCGAGCTGACCATCAGGAATGTGGATAAA
AACGACGAGGCCGAATACGTCTGCATCGCAGAGAACAAGGCTGGCGAGCAGGATGCCTCCATCCACCTCA
AGGTCTTTGCAAAGCCCAAAATCACCTATGTAGAGAATCAGACGGCCATGGAACTAGAGGAGCAAGTCAC
TCTGACCTGTGAAGCCTCCGGAGACCCCATCCCCTCCATCACCTGGAGAACATCCACCCGGAACATCAGC
AGTGAAGAAAAGACTCTGGATGGGCACATGGTGGTTCGCAGCCATGCTCGTGTGTCCTCCTTGACCCTGA
AGAGCATCCAGTACACAGATGCTGGAGAATACATCTGCACTGCCAGCAACACCATCGGCCAGGATTCCCA
GTCCATGTACCTCGAAGTTCAATATGCTCCCAAGCTCCAGGGCCCTGTGGCTGTGTACACTTGGGAAGGG
AACCAGGTGAACATCACCTGTGAGGTCTTCGCCTACCCAAGTGCCACAATCTCCTGGTTCCGAGATGGTC
AGTTGCTGCCAAGCTCCAACTACAGCAATATCAAGATCTACAACACCCCATCTGCTAGCTATCTGGAGGT
GACCCCTGATTCAGAAAATGACTTTGGAAACTACAACTGTACAGCAGTGAACCGTATTGGACAGGAGTCC
TTGGAATTCATCCTTGTTCAAGCAGACACACCGTCTTCTCCATCCATTGACCGGGTGGAACCATACTCCA
GCACAGCGCAGGTGCAGTTTGATGAGCCAGAGGCCACAGGGGGCGTGCCCATTCTCAAGTACAAGGCTGA
GTGGAAGTCGCTGGGCGAAGAATCCTGGCATTTCAAGTGGTATGATGCCAAAGAAGCCAACATGGAAGGC
ATTGTCACCATCATGGGCCTGAAACCTGAGACGAGGTACTCGGTACGACTGGCGGCCCTCAACGGCAAGG
GGCTGGGCGAGATCAGTGCAGCCACTGAGTTCAAGACACAGCCAGTCCGGGAACCCAGTGCACCCAAGCT
GGAAGGGCAGATGGGAGAGGACGGGAACTCCATCAAGGTGAACCTGATCAAGCAGGATGACGGAGGCTCC
CCCATCAGACACTATCTGGTCAAGTACAGAGCGCTCGCCTCTGAGTGGAAACCGGAAATCAGGCTCCCAT
CCGGCAGTGACCACGTCATGCTCAAGTCCCTGGACTGGAACGCAGAGTATGAAGTCTATGTGGTAGCTGA
AAACCAGCAAGGAAAATCCAAGGCAGCTCACTTTGTGTTCAGGACCTCAGCCCAGCCCACGGCCATCCCA
GCCAATGGCAGCCCCACCGCAGGCCTGAGCACAGGCGCCATTGTGGGCATCCTCATTGTCATCTTCGTCC
TGCTCCTGGTGGTCATGGACATCACCTGCTACTTCCTGAACAAGTGTGGCCTGCTCATGTGCATCGCTGT
TAACCTGTGTGGCAAAGCTGGGCCCGGAGCCAAGGGCAAAGACATGGAGGAGGGCAAGGCTGCTTTCTCG
AAAGATGAGTCAAAAGAACCCATTGTGGAGGTCCGAACGGAGGAAGAACGGACTCCAAACCATGATGGGG
GGAAGCACACAGAGCCCAACGAGACCACGCCGCTGACAGAACCCGAAAAGGGCCCTGTAGAAACAAAGTC
TGAGCCCCCGGAGTCAGAAGCCAAGCCAGCGCCAACTGAAGTCAAGACGGTCCCCAACGATGCCACACAA
ACAAAAGAGAATGAGAGCAAAGCATGA

Translation (848 aa):
MLRTKDLIWTLFFLGTAVSLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRIS
VVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCD
VVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNV
PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDK
NDEAEYVCIAENKAGEQDASIHLKVFAKPKITYVENQTAMELEEQVTLTCEASGDPIPSITWRTSTRNIS
SEEKTLDGHMVVRSHARVSSLTLKSIQYTDAGEYICTASNTIGQDSQSMYLEVQYAPKLQGPVAVYTWEG
NQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQES
LEFILVQADTPSSPSIDRVEPYSSTAQVQFDEPEATGGVPILKYKAEWKSLGEESWHFKWYDAKEANMEG
IVTIMGLKPETRYSVRLAALNGKGLGEISAATEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQDDGGS
PIRHYLVKYRALASEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTSAQPTAIP
ANGSPTAGLSTGAIVGILIVIFVLLLVVMDITCYFLNKCGLLMCIAVNLCGKAGPGAKGKDMEEGKAAFS
KDESKEPIVEVRTEEERTPNHDGGKHTEPNETTPLTEPEKGPVETKSEPPESEAKPAPTEVKTVPNDATQ
TKENESKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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