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Report for CCDS84939.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84939.1 Public Mus musculus 5 Git2 23 108 98 CCDS HistoryNCBI Gene:26431Re-query CCDS DB by CCDS ID:84939.1Re-query CCDS DB by GeneID:26431See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84939.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086564.10 ENSMUSP00000083754.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086564.10Link to Ensembl Protein Viewer:ENSMUSP00000083754.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000086564Re-query CCDS DB by Protein ID:ENSMUSP00000083754
Original member NCBI NM_001347400.1 NP_001334329.1 Updated not alive Link to Nucleotide Sequence:NM_001347400.1Link to Protein Sequence:NP_001334329.1Re-query CCDS DB by Nucleotide ID:NM_001347400Re-query CCDS DB by Protein ID:NP_001334329
Current member NCBI NM_001347400.2 NP_001334329.1 Accepted alive Link to Nucleotide Sequence:NM_001347400.2Link to Protein Sequence:NP_001334329.1Re-query CCDS DB by Nucleotide ID:NM_001347400Re-query CCDS DB by Protein ID:NP_001334329Link to BLAST:NP_001334329.1

Chromosomal Locations for CCDS 84939.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 114730182 114730394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114730992 114731055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114733193 114733381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114733861 114733943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114737348 114737437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114739033 114739281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114743731 114743880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114745429 114745571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114748184 114748295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114749243 114749340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114749562 114749634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114752279 114752330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114753279 114753324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114761573 114761667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114764347 114764477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114764587 114764673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114766452 114766557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114767096 114767208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114769617 114769750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114773314 114773365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2280 nt):
ATGTCGAAGCGGCTCCGGAGCAGCGACGTGTGCGCCGACTGCAACGGGCCTGATCCTTCCTGGGCGTCAG
TAAATAGGGGAACTTTCATATGTGACGAATGTTGCAGTGTCCATCGGAGCCTGGGGCGCCATATCTCCCA
AGTGAGGCATCTTAAACACACAGCATGGCCTCCAACCCTGCTCCAGATGGTTGAGACCTTGTACAACAAT
GGTGCTAACTCTATATGGGAACACTCTCTGCTGGACCCTGCCTCTATCATGAGTGGGAGGCGGAAAGCTA
ACCCACAGGACAAAGTTCACCCCAATAAAGCAGAATTCATCAGAGCCAAGTATCAGATGTTAGCGTTCGT
CCACCGATTGCCCTGCCGCGAGGACGACAGCGTGACGGCCAAAGATCTCAGTAAGCAACTCCATTCAAGT
GTGAGAACAGGGAATCTTGAGACCTGTCTGAGACTGTTGTCTTTAGGAGCCCAAGCCAACTTCTTTCATC
CTGAAAAAGGAAGCACTCCACTCCACGTCGCCTCCAAAGCAGGACAGATCTTACAGGCTGAATTGCTGGC
CGTGTATGGAGCTGACCCAGGCACACAAGATTCTAGTGGGAAGACTCCTGTTGACTATGCAAGGCAAGGA
GGGCACCATGAGTTGGCAGAACGCCTCATAGAAATACAGTACGAGCTGACGGATAGACTGGCCTTCTACC
TCTGCGGCCGGAAACCAGATCATAAAAGCGGACAGCACTTTCTAATTCCTCAGAGGGCAGACAGCAGCCT
GGATTTGTCTGAGTTGGCAAAAGCTGCGAAGAAGAAACTTCAATCTCTGAGTAATCATTTGTTTGAAGAA
CTTGCCATGGATGTGTACGACGAAGTTGACAGGCGAGAGACTGACGCAGTCTGGCTTGCCACGCAGAACC
ACAGTACCTTGGTAACCGAGACGACCGTCGTCCCTTTCCTTCCGGTCAACCCTGAGTACTCCTCCACACG
AAACCAGGGCAGACAGAAATTAGCTCGGTTTAACGCCCACGAGTTTGCTACGCTGGTCATCGACATCCTC
AGTGATGCCAAGAGGAGACAACAGGGCAGTCCTCTGTCCAGGTCAAAAGACAATGTGGAGCTCATATTGA
GAACAGTCAGTACCCAGCACAGCACTGAGAGCCAAGACAACGACCAGCCAGACTATGACAGTGTGGCCTC
CGATGAAGACACAGACGTGGAGACGAGGGCAAGCAAGGCAAACCGGCAGAAGAGCCTAGATTCAGATTTG
TCAGATGGACCAGTCACTGTGCAGGAATTTATGGAGGTCAAAAGCGCCCTAGTGGCTTCTGAGGCCAAGA
GACAGCAGCTAATGAAGGTGAATAACAACTTGAGTGACGAGCTGAGAATTATGCAGAAAAAGCTTCAAAC
TCTCCAGAGTGAGAACTCAAGCCTCAGGAGACAGGCCACAGCCAGTGCCTGTCAGGTGCAGACTGGCTCT
GACCACAAGGACACTGCAAGCCACTCGTCCCTAAAGCGACGGCCATCTGCCCGGGGCAGTAGACCCATGT
CCATGTACGAGACTGGATCAGGCCAGAAGCCATACCTCCCAATGGGAGAAGCCAGCCACCCTGAGGAGAG
CCGGACGAGACTTCAACCCTTCCCCACGCATATTGGGAGGAGTGCACTTGTGACCTCCTCTTCGTCTCTG
CCCTCCTTCCCCTCCACACTTTCCTGGTCCAGGGACGAAAGCGCCCGAAGGGCCTCCAGACTGGAGAAGC
AGAACAGCACCCCGGAGAGTGATTATGACAACACTGCCTGTGACCCTGAGCCAGACGACACGGGGTCAAC
CCGGAAGGGACGGCAGCGGAGCATGCTCTGGCAAGGTGATGGCTTATTGCCAGATACAGCAGAACCCCAC
TCGGTCCCCAGCCCCACCCTCCCCAGCACAGAAGACGTCATCCGGAAGACCGAGCAGATCACCAAAAACA
TCCAGGAGCTCCTGCGAGCAGCCCAGGAGAACAAGCATGACAGCTATATTCCCTGCTCAGAGAGGATACA
CGTTGCTGTAACCGAGATGGCAGCCCTGTTCCCCAAAAAACCCAAGTCTGACACGGTGAGGACTTCCCTC
CGCCTACTCACGTCCAGTGCCTACCGGCTCCAGTCGGAGTGCAGAAAGGCTCTCCCAGGAGACTCCAGCT
TACCCACAGATGTGCAGCTGGTCACACAGCAGGTCATCCAGTGTGCCTATGACATCGCCAAGGCCGCCAA
ACAGCTGGTCACAATCACCACCAAAGAGAACAGCAGCTGA

Translation (759 aa):
MSKRLRSSDVCADCNGPDPSWASVNRGTFICDECCSVHRSLGRHISQVRHLKHTAWPPTLLQMVETLYNN
GANSIWEHSLLDPASIMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCREDDSVTAKDLSKQLHSS
VRTGNLETCLRLLSLGAQANFFHPEKGSTPLHVASKAGQILQAELLAVYGADPGTQDSSGKTPVDYARQG
GHHELAERLIEIQYELTDRLAFYLCGRKPDHKSGQHFLIPQRADSSLDLSELAKAAKKKLQSLSNHLFEE
LAMDVYDEVDRRETDAVWLATQNHSTLVTETTVVPFLPVNPEYSSTRNQGRQKLARFNAHEFATLVIDIL
SDAKRRQQGSPLSRSKDNVELILRTVSTQHSTESQDNDQPDYDSVASDEDTDVETRASKANRQKSLDSDL
SDGPVTVQEFMEVKSALVASEAKRQQLMKVNNNLSDELRIMQKKLQTLQSENSSLRRQATASACQVQTGS
DHKDTASHSSLKRRPSARGSRPMSMYETGSGQKPYLPMGEASHPEESRTRLQPFPTHIGRSALVTSSSSL
PSFPSTLSWSRDESARRASRLEKQNSTPESDYDNTACDPEPDDTGSTRKGRQRSMLWQGDGLLPDTAEPH
SVPSPTLPSTEDVIRKTEQITKNIQELLRAAQENKHDSYIPCSERIHVAVTEMAALFPKKPKSDTVRTSL
RLLTSSAYRLQSECRKALPGDSSLPTDVQLVTQQVIQCAYDIAKAAKQLVTITTKENSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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