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Report for CCDS19570.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19570.2 Public Mus musculus 5 Git2 23 108 98 CCDS HistoryNCBI Gene:26431Re-query CCDS DB by CCDS ID:19570.2Re-query CCDS DB by GeneID:26431See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 19570.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112185.8 ENSMUSP00000107803.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112185.8Link to Ensembl Protein Viewer:ENSMUSP00000107803.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112185Re-query CCDS DB by Protein ID:ENSMUSP00000107803
Original member NCBI NM_019834.3 NP_062808.3 Updated not alive Link to Nucleotide Sequence:NM_019834.3Link to Protein Sequence:NP_062808.3Re-query CCDS DB by Nucleotide ID:NM_019834Re-query CCDS DB by Protein ID:NP_062808
Current member NCBI NM_019834.4 NP_062808.3 Accepted alive Link to Nucleotide Sequence:NM_019834.4Link to Protein Sequence:NP_062808.3Re-query CCDS DB by Nucleotide ID:NM_019834Re-query CCDS DB by Protein ID:NP_062808Link to BLAST:NP_062808.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062808.3 708 Q9JLQ2 708 100% 0 0

Chromosomal Locations for CCDS 19570.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 114730182 114730394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114730992 114731055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114733193 114733381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114733861 114733943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114737348 114737437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114739033 114739281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114745429 114745571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114748184 114748295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114749243 114749340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114749562 114749634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114752279 114752327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114753279 114753324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114761573 114761667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114764347 114764477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114764587 114764673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114766452 114766557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114767096 114767208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114769617 114769750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114773314 114773365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2127 nt):
ATGTCGAAGCGGCTCCGGAGCAGCGACGTGTGCGCCGACTGCAACGGGCCTGATCCTTCCTGGGCGTCAG
TAAATAGGGGAACTTTCATATGTGACGAATGTTGCAGTGTCCATCGGAGCCTGGGGCGCCATATCTCCCA
AGTGAGGCATCTTAAACACACAGCATGGCCTCCAACCCTGCTCCAGATGGTTGAGACCTTGTACAACAAT
GGTGCTAACTCTATATGGGAACACTCTCTGCTGGACCCTGCCTCTATCATGAGTGGGAGGCGGAAAGCTA
ACCCACAGGACAAAGTTCACCCCAATAAAGCAGAATTCATCAGAGCCAAGTATCAGATGTTAGCGTTCGT
CCACCGATTGCCCTGCCGCGAGGACGACAGCGTGACGGCCAAAGATCTCAGTAAGCAACTCCATTCAAGT
GTGAGAACAGGGAATCTTGAGACCTGTCTGAGACTGTTGTCTTTAGGAGCCCAAGCCAACTTCTTTCATC
CTGAAAAAGGAAGCACTCCACTCCACGTCGCCTCCAAAGCAGGACAGATCTTACAGGCTGAATTGCTGGC
CGTGTATGGAGCTGACCCAGGCACACAAGATTCTAGTGGGAAGACTCCTGTTGACTATGCAAGGCAAGGA
GGGCACCATGAGTTGGCAGAACGCCTCATAGAAATACAGTACGAGCTGACGGATAGACTGGCCTTCTACC
TCTGCGGCCGGAAACCAGATCATAAAAGCGGACAGCACTTTCTAATTCCTCAGAGGGCAGACAGCCTGGA
TTTGTCTGAGTTGGCAAAAGCTGCGAAGAAGAAACTTCAATCTCTGAGTAATCATTTGTTTGAAGAACTT
GCCATGGATGTGTACGACGAAGTTGACAGGCGAGAGACTGACGCAGTCTGGCTTGCCACGCAGAACCACA
GTACCTTGGTAACCGAGACGACCGTCGTCCCTTTCCTTCCGGTCAACCCTGAGTACTCCTCCACACGAAA
CCAGGGCAGACAGAAATTAGCTCGGTTTAACGCCCACGAGTTTGCTACGCTGGTCATCGACATCCTCAGT
GATGCCAAGAGGAGACAACAGGGCAGTCCTCTGTCCAGGTCAAAAGACAATGTGGAGCTCATATTGAGAA
CAGTCAGTACCCAGCACAGCACTGAGAGCCAAGACAACGACCAGCCAGACTATGACAGTGTGGCCTCCGA
TGAAGACACAGACGTGGAGACGAGGGCAAGCAAGGCAAACCGGCAGAAGCTTCAAACTCTCCAGAGTGAG
AACTCAAGCCTCAGGAGACAGGCCACAGCCAGTGCCTGTCAGGTGCAGACTGGCTCTGACCACAAGGACA
CTGCAAGCCACTCGTCCCTAAAGCGACGGCCATCTGCCCGGGGCAGTAGACCCATGTCCATGTACGAGAC
TGGATCAGGCCAGAAGCCATACCTCCCAATGGGAGAAGCCAGCCACCCTGAGGAGAGCCGGACGAGACTT
CAACCCTTCCCCACGCATATTGGGAGGAGTGCACTTGTGACCTCCTCTTCGTCTCTGCCCTCCTTCCCCT
CCACACTTTCCTGGTCCAGGGACGAAAGCGCCCGAAGGGCCTCCAGACTGGAGAAGCAGAACAGCACCCC
GGAGAGTGATTATGACAACACTGCCTGTGACCCTGAGCCAGACGACACGGGGTCAACCCGGAAGGGACGG
CAGCGGAGCATGCTCTGGCAAGGTGATGGCTTATTGCCAGATACAGCAGAACCCCACTCGGTCCCCAGCC
CCACCCTCCCCAGCACAGAAGACGTCATCCGGAAGACCGAGCAGATCACCAAAAACATCCAGGAGCTCCT
GCGAGCAGCCCAGGAGAACAAGCATGACAGCTATATTCCCTGCTCAGAGAGGATACACGTTGCTGTAACC
GAGATGGCAGCCCTGTTCCCCAAAAAACCCAAGTCTGACACGGTGAGGACTTCCCTCCGCCTACTCACGT
CCAGTGCCTACCGGCTCCAGTCGGAGTGCAGAAAGGCTCTCCCAGGAGACTCCAGCTTACCCACAGATGT
GCAGCTGGTCACACAGCAGGTCATCCAGTGTGCCTATGACATCGCCAAGGCCGCCAAACAGCTGGTCACA
ATCACCACCAAAGAGAACAGCAGCTGA

Translation (708 aa):
MSKRLRSSDVCADCNGPDPSWASVNRGTFICDECCSVHRSLGRHISQVRHLKHTAWPPTLLQMVETLYNN
GANSIWEHSLLDPASIMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCREDDSVTAKDLSKQLHSS
VRTGNLETCLRLLSLGAQANFFHPEKGSTPLHVASKAGQILQAELLAVYGADPGTQDSSGKTPVDYARQG
GHHELAERLIEIQYELTDRLAFYLCGRKPDHKSGQHFLIPQRADSLDLSELAKAAKKKLQSLSNHLFEEL
AMDVYDEVDRRETDAVWLATQNHSTLVTETTVVPFLPVNPEYSSTRNQGRQKLARFNAHEFATLVIDILS
DAKRRQQGSPLSRSKDNVELILRTVSTQHSTESQDNDQPDYDSVASDEDTDVETRASKANRQKLQTLQSE
NSSLRRQATASACQVQTGSDHKDTASHSSLKRRPSARGSRPMSMYETGSGQKPYLPMGEASHPEESRTRL
QPFPTHIGRSALVTSSSSLPSFPSTLSWSRDESARRASRLEKQNSTPESDYDNTACDPEPDDTGSTRKGR
QRSMLWQGDGLLPDTAEPHSVPSPTLPSTEDVIRKTEQITKNIQELLRAAQENKHDSYIPCSERIHVAVT
EMAALFPKKPKSDTVRTSLRLLTSSAYRLQSECRKALPGDSSLPTDVQLVTQQVIQCAYDIAKAAKQLVT
ITTKENSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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