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Report for CCDS16704.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16704.1 Public Mus musculus 2 Prom2 23 108 98 CCDS HistoryNCBI Gene:192212Re-query CCDS DB by CCDS ID:16704.1Re-query CCDS DB by GeneID:192212See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16704.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028855.13 ENSMUSP00000028855.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028855.13Link to Ensembl Protein Viewer:ENSMUSP00000028855.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000028855Re-query CCDS DB by Protein ID:ENSMUSP00000028855
Original member Current member NCBI NM_138750.2 NP_620089.2 Accepted alive Link to Nucleotide Sequence:NM_138750.2Link to Protein Sequence:NP_620089.2Re-query CCDS DB by Nucleotide ID:NM_138750Re-query CCDS DB by Protein ID:NP_620089Link to BLAST:NP_620089.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620089.2 835 Q3UUY6-1 835 100% 0 0

Chromosomal Locations for CCDS 16704.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 127528755 127528818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127529132 127529238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127529400 127529489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127530120 127530188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127530364 127530444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127530704 127530757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127531105 127531197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127531809 127531880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127532737 127532883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127534825 127534909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127535047 127535138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127535545 127535668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127536543 127536695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127536956 127537115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127537330 127537393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127538258 127538332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127538662 127538867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127539183 127539272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127539523 127539586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127539777 127539897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127539996 127540198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127540512 127540561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127541077 127541320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2508 nt):
ATGACGCGCTCACCCGGCCTCATGGTGCCCCTGCTGGGCCTGAGCCTGGGACTGGCCCTGAGCCTGCCCG
AAGCTGTGACAGACGACTGCGGGTCCCTCGGGCGCGTGGAGCACCTGGCATTCGCTCGGGTGCCCAGGAC
ACGAGAGCTGGCCCCTCTTGTTCGCGCGTCGGGGCCCCTGAACTCCCTCTATGGCACCGTGCGACGATTC
CTCTCCGTGGTTCAACTTAACCCCTTCCCGGCAGAGTTGATAAAGACCCTGCTGAATGACCCATCTTCTG
TGAAGACAGATGAGGTGGTTCGATATGAGGCAGGCTACGTGGTGTGTGCTGTGATTGCTGGCCTCTACCT
CCTATTGGTGCCCATCACTGGGCTCTGCTTCTGTTGCTGTCGCTGCCGCCAGCGCTGTGGGGGCAGAGTG
AAGACGGAGCACAAGGCCATGGCCTGTGAACGTGGTACCCTCATGATCTTCCTGCTGCTGACCACCCTCG
TGCTTCTGATTGGTATGGTCTGTGCTTTTGCTACAAACCAACACACACATAGTCAGACGGGGCCCAGTGT
GAAAGCTGTCCCTGAGACCCTGCTCAGCCTAAGAGGCCTGGTCTCTGATGTCCCTGAAGAGCTGCGGGCC
ATTGCTGAGCAGTTCTCTGTGCCTCAGAAGCAAGTCTCAAAGGAGCTGGATGGTGTTGGTGAGAACCTTG
GGAACGTAATTCATAACCGGCTCAAGAGCACAGTGTACCCAGTGCTAGCCTCAGTGCACAGCCTGGGCCA
GGCCCTGCAGGTCTCCATAGACCACCTTCGAGCCCTGAACACCACCTCAGTGGAGCTGCAGGAGGCTCAG
CGGCACCTGGAGCCACCTGTGCAGGCGCACCGGGAACGCCTGCTCGCCCTGCTTCAGGACAGCTGGTGCC
ACGAGGAGAATTGCAAGCGGGTGCTCAGCCAGGCCGGTGCTCTGCAACTGGGCGCTGACTTTAGCCAGAC
GCCCCCTGTGGATGATGTCCTGCATCGGCTGAAGGATGTCCCAGAAACCAACTTCTCCAGCATGGTCCAG
GAGGAGAAAGCCACCTTCAATAACCTCCCGCTCCTGGTTCAAGTGCAGGCGGTCAGTGTGGTCAAAGATG
TGAAAAAGGCACTGGCTGAGCAGCCTGAAGGGTTGAGGATGCTGGCCCAAGCGTTCCCAGGTTCAGAGGC
AGCCTCCCGCTGGAGCCAGGCACTGGAGGGGCTGGAACAGCGCAGCCGCCCCTACTTGCAGGAGGTGCAA
CAATATGAGACATACAGGTGGATTTTGGGATGCGTGCTGTGCTCTGCCATCCTGCTTGTGGTGATCTGTA
ACCTGCTGGGCCTCAGCCTGGGCATCTGGGGGTTGTTTGCCAGGGAGGACCCCAGCCACTCTGAAACCAA
GGGCGAGGCTGGAGCCCGCCTCCTCATGGCAGGTGTGGCCTTCAGCTTCCTCTTCGCAGTCCCCCTCATC
CTCCTCGTCTTCGTCACTTTCCTGGTGGGTGGCAATGTGCAGACGCTGGTGTGCCGGAGCTGGGAGAGTG
GAGAGCTGTATGAGTTTGCAGACACTCCGGGGAACTTGCCACCATCCATGAACCTATCCTATCTTCTTGG
CCTGAAGAAAAACATCAGCATCGTCCAGGCCTATCGACAGTGTAAGGCAGGGGCAGTACTCTGGAAGGTT
CTACAGCTCAATGACTCGTATGACCTGGATAAGCACCTGGATATCAAACAGTATACCCACAAGATTCAGC
AGGAGCTTCAGAGCTTCCAAGTAGATTTGAAGGAGCTAGACCTGTTGAGCCCCACTGCCCGCCAGGACCT
GGAGGCTTTGCAGAGGAGCGGGCTGGAGAAAATCCACTACAGAGGCTTCCTTGTGCAGATCCAGAAGCCT
GTGGTGAACACTGACATGTGGCAGCTGGCGCAGGAGCTGGAAGGACTGGCCCAGGCCCAAAATGACTCTT
TACTGAGGCAGCAGCTACGGGAGGAGGCCAGAGAACTTCGAAGCCTCTACCAGGAGAAGGTTGTCCCCCA
GGAGAGCCTTGTGACCAAGCTCAACTTCAGTGTCAAGACCTTGGAGTCCTTGGCCCCAAGTCTGCAGGTG
AATACCTCAGACTTTCTTGACAGTGTCACTCGTCTAAAAGGAGAGCTGCCTGTGCAGATCAACCACATCC
TGAGGAATGCCACTGAGTGTTTCCTGACCAGGGAAATGGGCTACTTCTCTCAGTATGTGACCTGGGTGAG
AGCAGAGGTGACTCAGCGCATCGCCACCTGCCAGCCCTTCTCTACAGCCCTGGACAATGGTCATGTGATC
CTGTGTGACATGATGGCTGACCCCTGGAACGCCTTCTGGTTTTGCCTGGGGTGGTGCACCTTCTTCCTCA
TCCCCAGCATCATCTTCGCTGTCAAGACCTCCAAGTACTTCCGTCCCATCCGGAAACGCCTCAGCTCCAC
CAGCTCTGAAGAGACACAACTTTTCCATATCCCCAGGGTCACCTCTCTGAAGCTATAG

Translation (835 aa):
MTRSPGLMVPLLGLSLGLALSLPEAVTDDCGSLGRVEHLAFARVPRTRELAPLVRASGPLNSLYGTVRRF
LSVVQLNPFPAELIKTLLNDPSSVKTDEVVRYEAGYVVCAVIAGLYLLLVPITGLCFCCCRCRQRCGGRV
KTEHKAMACERGTLMIFLLLTTLVLLIGMVCAFATNQHTHSQTGPSVKAVPETLLSLRGLVSDVPEELRA
IAEQFSVPQKQVSKELDGVGENLGNVIHNRLKSTVYPVLASVHSLGQALQVSIDHLRALNTTSVELQEAQ
RHLEPPVQAHRERLLALLQDSWCHEENCKRVLSQAGALQLGADFSQTPPVDDVLHRLKDVPETNFSSMVQ
EEKATFNNLPLLVQVQAVSVVKDVKKALAEQPEGLRMLAQAFPGSEAASRWSQALEGLEQRSRPYLQEVQ
QYETYRWILGCVLCSAILLVVICNLLGLSLGIWGLFAREDPSHSETKGEAGARLLMAGVAFSFLFAVPLI
LLVFVTFLVGGNVQTLVCRSWESGELYEFADTPGNLPPSMNLSYLLGLKKNISIVQAYRQCKAGAVLWKV
LQLNDSYDLDKHLDIKQYTHKIQQELQSFQVDLKELDLLSPTARQDLEALQRSGLEKIHYRGFLVQIQKP
VVNTDMWQLAQELEGLAQAQNDSLLRQQLREEARELRSLYQEKVVPQESLVTKLNFSVKTLESLAPSLQV
NTSDFLDSVTRLKGELPVQINHILRNATECFLTREMGYFSQYVTWVRAEVTQRIATCQPFSTALDNGHVI
LCDMMADPWNAFWFCLGWCTFFLIPSIIFAVKTSKYFRPIRKRLSSTSSEETQLFHIPRVTSLKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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