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Report for CCDS16680.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16680.1 Public Mus musculus 2 Galk2 23 108 98 CCDS HistoryNCBI Gene:69976Re-query CCDS DB by CCDS ID:16680.1Re-query CCDS DB by GeneID:69976See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16680.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028636.12 ENSMUSP00000028636.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028636.12Link to Ensembl Protein Viewer:ENSMUSP00000028636.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000028636Re-query CCDS DB by Protein ID:ENSMUSP00000028636
Original member Current member NCBI NM_175154.3 NP_780363.1 Accepted alive Link to Nucleotide Sequence:NM_175154.3Link to Protein Sequence:NP_780363.1Re-query CCDS DB by Nucleotide ID:NM_175154Re-query CCDS DB by Protein ID:NP_780363Link to BLAST:NP_780363.1

Chromosomal Locations for CCDS 16680.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 125859358 125859377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125878278 125878366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125887864 125887987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125893353 125893443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125896645 125896791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125929561 125929659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125931253 125931405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125946784 125946994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125975260 125975461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125983055 125983262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1344 nt):
ATGCCCGACCTATCTGAAAGATTGCTGAAGCTAAAAGAGATGTTTAACTCTAAATTTGGGTCCACACCCA
AGTTTTATGTTCGAGCCCCAGGAAGAGTCAACATAATAGGTGAGCACATAGATTACTGTGGATATTCCGT
TATTCCCATGGCTGTGGAACAAGACATGTTAATAGCTGTGGAACCTGTGAAAACACACACTCTCCAACTG
GCTAATACAGACCCCTTGTATCCAGACTTCAGTACTACAGCTAATAACATCTGTATCGACAAGACCAAAC
CTCTATGGCACAACTACTTCTTGTGTGGCTTTAAGGGAATTCAGGAACACTTTGGCCTTAGTAAGCTGCC
TGGAATGAATTGCCTGGTAGATGGAAATATACCCCCGAGTTCGGGCCTCTCCAGCTCCAGTGCTCTGGTT
TGCTGTGCTGGGTTAGTGACTCTCACGGTGCTGGGACTGAGACTTTCCAAGGTGGAACTTGCAGAAATCT
GTGCCAAGAGTGAGCGCTACATAGGCACTGAAGGTGGCGGCATGGACCAGTCCATATCATTCCTTGCAGA
AGAAGGAACTGCCAAGTTAATAGAATTTAGCCCTCTGAGAGCGACTAATGTGAAGCTCCCCAGTGGGGCA
GTCTTTGTGATTGCCAACAGCTGCATGGAAATGAACAAGGCGGCCACTTCACATTTCAATGTCAGGGTGA
TGGAGTGTCGACTGGCGGCAAAGGTCCTTGCTAAACACAAAGGCTTGCAATGGGATAATGTCCTGCGGCT
AGAGGAAGTGCAAAGCAAACTCGGGATTAGTCTGGAAGAGATGCTGTTGGTCACAGAGGATGCCCTTCAT
CCTGAACCCTACAGCCGGGAGGAGATCTGCAGGTGCCTGGGAATTAGCCTCGAGAGACTCCGCACCCAAA
TCCTGACTCCAAATACTCAAGATGAACTCACCTTTAAGCTCTACCAGCGGGCCAAGCACGTGTACAGTGA
GGCTGCACGCGTGCTGCAGTTTAAGCAGGTATGTGAAGATGCGCCAGACAACGCAGTCCAGCTGCTGGGG
GAGCTAATGAACCAGAGCCACAGAAGCTGCCGGGACATGTATGAGTGCAGCTGCCCTGAGCTGGACCAGC
TAGTGGACATCTGCCGGAAGTTTGGGGCCAAAGGCTCACGACTTACTGGAGCAGGATGGGGAGGCTGCAC
TGTGTCCCTCGTGCCCGCTGACATGCTGTCCAGCTTTCTCGCCAGTGTGCACGAAGCTTATTACCAGGGG
AACACATCCCGCCTGGCTCAGGAGAAGCATAGCTTGTTTGCCACCAAGCCTGGAGGCGGGGCCTTGGTTT
TCCGTGAGGTCTAA

Translation (447 aa):
MPDLSERLLKLKEMFNSKFGSTPKFYVRAPGRVNIIGEHIDYCGYSVIPMAVEQDMLIAVEPVKTHTLQL
ANTDPLYPDFSTTANNICIDKTKPLWHNYFLCGFKGIQEHFGLSKLPGMNCLVDGNIPPSSGLSSSSALV
CCAGLVTLTVLGLRLSKVELAEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIEFSPLRATNVKLPSGA
VFVIANSCMEMNKAATSHFNVRVMECRLAAKVLAKHKGLQWDNVLRLEEVQSKLGISLEEMLLVTEDALH
PEPYSREEICRCLGISLERLRTQILTPNTQDELTFKLYQRAKHVYSEAARVLQFKQVCEDAPDNAVQLLG
ELMNQSHRSCRDMYECSCPELDQLVDICRKFGAKGSRLTGAGWGGCTVSLVPADMLSSFLASVHEAYYQG
NTSRLAQEKHSLFATKPGGGALVFREV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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