NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS89014.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89014.1 Public Mus musculus 17 Nubp2 23 108 98 CCDS HistoryNCBI Gene:26426Re-query CCDS DB by CCDS ID:89014.1Re-query CCDS DB by GeneID:26426See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89014.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000234597.1 ENSMUSP00000157064.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234597.1Link to Ensembl Protein Viewer:ENSMUSP00000157064.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234597Re-query CCDS DB by Protein ID:ENSMUSP00000157064
Original member Current member EBI ENSMUST00000234928.1 ENSMUSP00000157378.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234928.1Link to Ensembl Protein Viewer:ENSMUSP00000157378.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234928Re-query CCDS DB by Protein ID:ENSMUSP00000157378
Original member Current member NCBI NM_001355396.1 NP_001342325.1 Accepted alive Link to Nucleotide Sequence:NM_001355396.1Link to Protein Sequence:NP_001342325.1Re-query CCDS DB by Nucleotide ID:NM_001355396Re-query CCDS DB by Protein ID:NP_001342325Link to BLAST:NP_001342325.1

Chromosomal Locations for CCDS 89014.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 24883169 24883314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24883806 24883875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24884125 24884235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24884401 24884555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24885419 24885572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (636 nt):
ATGCTCCGTGCACAAGGCAAGGCCGTGCACCAGTGTGACAATGGCTGGGTGCCTGTCTTTGTGGATCAGG
AGCAGAGCATCTCCCTTATGTCTGTGGGGTTCCTGCTGGAAAACCCTGATGAGGCCGTGGTGTGGAGAGG
TCCCAAGAAACATGCACTGATAAAGCAGTTTGTGTCTGACGTGGCCTGGGGGCAGCTGGATTATCTGGTT
GTGGACACACCTCCAGGGACCTCTGATGAGCACATGGCCACTATGGAAGCCCTGCGCCCCTACAGGCCCC
TTGGGGCTCTTGTAGTCACCACACCACAGGCGGTGTCTATTGGGGATGTGAGGCGGGAGCTGACCTTCTG
TAAGAAGACTGGGCTGCAGGTGATAGGGGTCATAGAGAACATGAGCGGCTTCACCTGCCCACACTGCGCT
GAGTGCACCAATGTCTTCTCCAGCGGCAGTGGGGAGGAGCTGGCCCGGCTGGCTGGAGTTCCCTTTTTAG
GCTCTGTCCCCCTGGATTCCCAACTTACCAGGAGCTTGGAGGAAGGGCGTGACTTCATCCAGGAATTTCC
CAAAAGCACTGCATATTCCGCACTCACGTCCATAGCCCAGAGAGTTGTGCACAGGATGTCTGCCCTGTGC
TCCTGA

Translation (211 aa):
MLRAQGKAVHQCDNGWVPVFVDQEQSISLMSVGFLLENPDEAVVWRGPKKHALIKQFVSDVAWGQLDYLV
VDTPPGTSDEHMATMEALRPYRPLGALVVTTPQAVSIGDVRRELTFCKKTGLQVIGVIENMSGFTCPHCA
ECTNVFSSGSGEELARLAGVPFLGSVPLDSQLTRSLEEGRDFIQEFPKSTAYSALTSIAQRVVHRMSALC
S


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH