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Report for CCDS28374.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28374.3 Public Mus musculus 17 Sytl3 23 108 98 CCDS HistoryNCBI Gene:83672Re-query CCDS DB by CCDS ID:28374.3Re-query CCDS DB by GeneID:83672See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 28374.1
The coding region has been updated to represent an alternative 5' splice pattern, resulting in an extended N-terminus that is more supported by available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 28374.3

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159880.2 ENSMUSP00000125469.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159880.2Link to Ensembl Protein Viewer:ENSMUSP00000125469.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000159880Re-query CCDS DB by Protein ID:ENSMUSP00000125469
Original member Current member NCBI NM_183370.2 NP_899226.2 Accepted alive Link to Nucleotide Sequence:NM_183370.2Link to Protein Sequence:NP_899226.2Re-query CCDS DB by Nucleotide ID:NM_183370Re-query CCDS DB by Protein ID:NP_899226Link to BLAST:NP_899226.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_899226.2 412 Q99N48-2 412 100% 0 0

Chromosomal Locations for CCDS 28374.3

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 6702952 6702958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6705894 6706018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6709097 6709231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6715384 6715562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6728239 6728341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6732952 6733122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6734466 6734571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6735378 6735474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6736411 6736616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6737727 6737836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1239 nt):
ATGAGAAAGCTCTCCAAGTCCCAGAATGACATGACCTCTGAGAAGCATCTTCTGGCCATGGACCCCAGGC
AGTGTGTGGGACACACGGAGAGGCGGAGCCAGTCAGACACTGCAGTCAACGTGACTTCCAGGAAGGCCAG
CACACCCGATATTCTGAAAGCATTCCATCAAGAAGATCCCAAACACCCTCCCGACCCTGTTTTGAAGCAA
GACACTCCCCCGTCCAGTCCGACACACAGCGCTGTCTTCTCTGGAGGCTTGAGACACGGAAGCTTAATTA
GCATCAACAGCACCTGCACAGAGATGGGTAATTTTGACAATGCTAATGTCACTGGAGAAATAGAATTTGC
CATTCATTACTGCGTTAAAAGCTGCTCTTTAGAGATATGCATCAAGACCTGTAAGAACCTTGCCTATGGA
GAAGAAAAGAAAAGAAAGTGCAATCCGTATGTCAAGACCTACCTGCTGCCTGACAGGTCTTCTCAGGGAA
AACGCAAGACACGAGTCCAAAAGAACACGCTGGACCCGACTTTCGAGGAAACCTTGAAGTATCAGGTGGA
CCCTGGCCAGCTGATGACCCGGAGGCTGCAGGTCTCTGTGTGGCACCTAGGCACCCTTGCCCGGAGGGTG
TTCCTCGGAGAAGTGATCCTTCCACTGGCCATGTGGGACTTTAAGGACAGTACGGCACAGAATGCCAGAT
GGTATCCTCTGCGGGCCAAGGCTGAGAAATACGAAGAGAATATTCCTCAGAATAATGGAGAACTTGCTGT
TCGAGCCAAATTGGTCCTTCCCGCAGGGCCAAGAAAGCCCCAGGAGGCCCAAGAAGGTCAGCTAGCGCTT
AATGGTCAACTGTGTCTGGTTGTGTTGGGAGCCAAGAATTTACCGGTGAGGTCAGATGGCACCTTAAACT
CATTTGTTAAGGGCTGTCTCACCCTGCCAAACCAACAAAAGCTGCGTGTGAAGTCCCCAGTCCTGAAGAA
GCAGGCTTGTCCCCAGTGGAAACACTCCTTTGTGTTTAATGGTGTGAGCAGTTCTCAGCTGAGACAGTCC
ACCTTGGAGCTGACTGTCTGGGACCAGGCCATCTTTGGTATGAACGACCGTCTGCTCGGGGAAGCCAGGC
TTGGTTCAAAGGGAGGTGCTGCGGGTTGTCCCGACTCAGGTTCACAGTCCAAGCTTCAGTGGCACAGAGT
CCTCTCCAGCCCAAACCTGTGGACAGACATGACCCTCGTCCTGCACTGA

Translation (412 aa):
MRKLSKSQNDMTSEKHLLAMDPRQCVGHTERRSQSDTAVNVTSRKASTPDILKAFHQEDPKHPPDPVLKQ
DTPPSSPTHSAVFSGGLRHGSLISINSTCTEMGNFDNANVTGEIEFAIHYCVKSCSLEICIKTCKNLAYG
EEKKRKCNPYVKTYLLPDRSSQGKRKTRVQKNTLDPTFEETLKYQVDPGQLMTRRLQVSVWHLGTLARRV
FLGEVILPLAMWDFKDSTAQNARWYPLRAKAEKYEENIPQNNGELAVRAKLVLPAGPRKPQEAQEGQLAL
NGQLCLVVLGAKNLPVRSDGTLNSFVKGCLTLPNQQKLRVKSPVLKKQACPQWKHSFVFNGVSSSQLRQS
TLELTVWDQAIFGMNDRLLGEARLGSKGGAAGCPDSGSQSKLQWHRVLSSPNLWTDMTLVLH


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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