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Report for CCDS70484.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70484.1 Public Mus musculus 13 Homer1 23 108 98 CCDS HistoryNCBI Gene:26556Re-query CCDS DB by CCDS ID:70484.1Re-query CCDS DB by GeneID:26556See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70484.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060490.10 ENSMUSP00000050471.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060490.10Link to Ensembl Protein Viewer:ENSMUSP00000050471.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000060490Re-query CCDS DB by Protein ID:ENSMUSP00000050471
Original member Current member NCBI NM_001284189.2 NP_001271118.1 Accepted alive Link to Nucleotide Sequence:NM_001284189.2Link to Protein Sequence:NP_001271118.1Re-query CCDS DB by Nucleotide ID:NM_001284189Re-query CCDS DB by Protein ID:NP_001271118Link to BLAST:NP_001271118.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001271118.1 354 Q9Z2Y3-3 354 100% 0 0

Chromosomal Locations for CCDS 70484.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 93305298 93305302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93341756 93341912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93346569 93346700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93349205 93349297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93355940 93356079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93387524 93387680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93391691 93391801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93393028 93393108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93402041 93402229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGGGGGAGCAACCTATCTTCAGCACTCGAGCTCATGTCTTCCAGATTGACCCGAACACAAAGAAGAACT
GGGTACCCACCAGCAAGCATGCAGTTACTGTATCTTATTTTTATGACAGCACAAGAAATGTGTATAGGAT
AATCAGTTTAGATGGCTCAAAGGCAATAATAAATAGCACCATCACACCAAACATGACATTTACTAAAACA
TCTCAAAAGTTTGGCCAATGGGCTGATAGCCGGGCAAACACTGTTTATGGACTGGGATTCTCCTCTGAGC
ATCATCTTTCAAAATTCGCAGAAAAGTTTCAGGAATTTAAGGAAGCTGCTCGGCTTGCAAAGGAGAAGTC
GCAGGAGAAGATGGAGCTGACCAGTACCCCTTCACAGGAATCAGCAGGAGGAGATCTTCAGTCTCCTTTG
ACACCAGAAAGTATCAATGGGACAGACGATGAGAGAACACCCGATGTGACACAGAACTCAGAGCCAAGGG
CTGAGCCAACTCAGAATGCATTGCCATTTCCACATAGTTCAGCAATCAGCAAACACTGGGAGGCTGAGCT
AGCTACCCTCAAAGGCAACAATGCCAAACTCACTGCAGCCCTGCTGGAGTCCACTGCCAATGTGAAGCAG
TGGAAGCAACAGCTTGCTGCGTACCAGGAGGAAGCAGAGCGGCTGCACAAGCGGGTCACTGAGCTGGAGT
GTGTTAGTAGTCAAGCAAACGCTGTGCACAGCCACAAGACAGAGCTGAACCAGACAGTGCAGGAACTGGA
AGAGACCCTGAAAGTAAAGGAAGAGGAAATAGAAAGATTAAAACAAGAAATCGATAATGCCAGAGAACTC
CAAGAACAGAGGGACTCTTTGACTCAGAAACTACAGGAAGTTGAAATTCGAAATAAAGACCTGGAGGGGC
AGCTGTCTGACCTAGAACAGCGCCTGGAGAAGAGCCAGAACGAACAAGAGGCTTTCCGCAGTAACCTGAA
GACACTCCTAGAAATTCTGGATGGAAAAATATTTGAACTAACAGAATTACGAGATAATTTGGCCAAGCTA
CTGGAATGCAGCTAA

Translation (354 aa):
MGEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDGSKAIINSTITPNMTFTKT
SQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEAARLAKEKSQEKMELTSTPSQESAGGDLQSPL
TPESINGTDDERTPDVTQNSEPRAEPTQNALPFPHSSAISKHWEAELATLKGNNAKLTAALLESTANVKQ
WKQQLAAYQEEAERLHKRVTELECVSSQANAVHSHKTELNQTVQELEETLKVKEEEIERLKQEIDNAREL
QEQRDSLTQKLQEVEIRNKDLEGQLSDLEQRLEKSQNEQEAFRSNLKTLLEILDGKIFELTELRDNLAKL
LECS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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