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Report for CCDS84048.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84048.1 Public Mus musculus 13 Homer1 23 108 98 CCDS HistoryNCBI Gene:26556Re-query CCDS DB by CCDS ID:84048.1Re-query CCDS DB by GeneID:26556See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84048.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109492.8 ENSMUSP00000105118.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109492.8Link to Ensembl Protein Viewer:ENSMUSP00000105118.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109492Re-query CCDS DB by Protein ID:ENSMUSP00000105118
Original member Current member NCBI NM_001347598.1 NP_001334527.1 Accepted alive Link to Nucleotide Sequence:NM_001347598.1Link to Protein Sequence:NP_001334527.1Re-query CCDS DB by Nucleotide ID:NM_001347598Re-query CCDS DB by Protein ID:NP_001334527Link to BLAST:NP_001334527.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334527.1 203 Q9Z2Y3-4 203 100% 0 0

Chromosomal Locations for CCDS 84048.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 93305298 93305302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93341756 93341912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93346569 93346700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93349205 93349297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93355940 93356079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93366243 93366327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (612 nt):
ATGGGGGAGCAACCTATCTTCAGCACTCGAGCTCATGTCTTCCAGATTGACCCGAACACAAAGAAGAACT
GGGTACCCACCAGCAAGCATGCAGTTACTGTATCTTATTTTTATGACAGCACAAGAAATGTGTATAGGAT
AATCAGTTTAGATGGCTCAAAGGCAATAATAAATAGCACCATCACACCAAACATGACATTTACTAAAACA
TCTCAAAAGTTTGGCCAATGGGCTGATAGCCGGGCAAACACTGTTTATGGACTGGGATTCTCCTCTGAGC
ATCATCTTTCAAAATTCGCAGAAAAGTTTCAGGAATTTAAGGAAGCTGCTCGGCTTGCAAAGGAGAAGTC
GCAGGAGAAGATGGAGCTGACCAGTACCCCTTCACAGGAATCAGCAGGAGGAGATCTTCAGTCTCCTTTG
ACACCAGAAAGTATCAATGGGACAGACGATGAGAGAACACCCGATGTGACACAGAACTCAGAGCCAAGGG
CTGAGCCAACTCAGAATGCATTGCCATTTCCACATAGTTCTTCAAGATGGATTTTTTTTCCTTACTGTGA
AGACAGCCAACTTTCTTTGCTGGAGAGCTCCTCTGGCCTTGGTTATTTTTGA

Translation (203 aa):
MGEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDGSKAIINSTITPNMTFTKT
SQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEAARLAKEKSQEKMELTSTPSQESAGGDLQSPL
TPESINGTDDERTPDVTQNSEPRAEPTQNALPFPHSSSRWIFFPYCEDSQLSLLESSSGLGYF


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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