NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS14872.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14872.1 Public Mus musculus 1 Arhgef4 23 108 98 CCDS HistoryNCBI Gene:226970Re-query CCDS DB by CCDS ID:14872.1Re-query CCDS DB by GeneID:226970See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14872.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047664.15 ENSMUSP00000035980.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047664.15Link to Ensembl Protein Viewer:ENSMUSP00000035980.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000047664Re-query CCDS DB by Protein ID:ENSMUSP00000035980
Original member Current member NCBI NM_183019.3 NP_898840.2 Accepted alive Link to Nucleotide Sequence:NM_183019.3Link to Protein Sequence:NP_898840.2Re-query CCDS DB by Nucleotide ID:NM_183019Re-query CCDS DB by Protein ID:NP_898840Link to BLAST:NP_898840.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_898840.2 484 Q7TNR9 484 100% 0 0

Chromosomal Locations for CCDS 14872.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 34804968 34805093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34805956 34806135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34806315 34806494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34807059 34807291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34807642 34807771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34809697 34809828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34810311 34810554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34811086 34811163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34811678 34811829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1455 nt):
ATGGATGACCAGGAGCTGGGCTTCAAAGCTGGGGATGTCATCGAAGTGATGGATGCCACCAACAGGGAAT
GGTGGTGGGGCCGAGTGGCAGATGGCGAGGGGTGGTTCCCTGCCAGCTTTGTACGGCTGCGCGTGAACCA
GGATGAGCCCGCGGATGACTATGAGGCCCCGCGGGCCGGGGCTAGAGAGGCCGATGACAGCGGTCCAGAG
GCTCAGAGCTGCAAGGACCAGATGCGCACAAATGTCATCAATGAGATCCTCAGCACTGAGCGAGACTACA
TCAAGCACCTTCGCGACATCTGCGAGGGCTATGTCCGCCAGTGCCGCAAACGGGAGGATATGTTCAGTGA
AGAGCAGCTGCGCACCATCTTTGGGAACATCGAGGACATCTACCGCTGCCAAAAGGCATTTGTGAAGGCT
TTGGAGCAGAAGTTCAACACGGAGCGGCCACACCTGAGCGAGTTGGGGGCCTGCTTTCTGGAACACCAAG
CAGACTTCCAGATCTATTCTGAGTACTGCAACAACCACCCCAATGCCTGCGTGGAGCTCTCCCGGCTCAC
GAAGCTCAGCAAGTACGTGTACTTCTTCGAGGCCTGCCGGCTGCTGCAAAGGATGATTGACATCTCGCTG
GATGGCTTTCTGCTGACCCCGGTGCAGAAGATCTGCAAGTATCCCCTCCAGCTGGCGGAGCTGCTCAAGT
ACACACACCCCCAGCACAGGGACTTTAAGAATGTTGAAGCTGCCTTGCACGCCATGAAGAATGTGGCCCA
GCTCATCAACGAACGGAAACGAAGACTTGAAAACATCGACAAGATTGCTCAGTGGCAGAGCTCCATAGAG
GACTGGGAGGGGGAAGACCTTCTGGTCAGGAGCTCGGAACTCATCCACTCGGGGGAGCTGACCCGCGTGA
CACAGCCTCAAGCCAGGAGTCAGCAGAGAATGTTTTTTCTCTTTGACCGCCAGCTCATCTACTGTAAAAA
GGATCTGCTTCGCCGGGACGTGCTGTACTACAAGGGCCGGCTGGACATGGATGACCTGGAGGTGGTAGAT
GTGGAAGATGGGAAGGACCGAGACCTCCATGTGAGTGTCAAGAACGCCTTCCGTCTGTACTGTGGTACCA
CGGGGGACAGCCACCTACTGTGTGCCAGGAAGCCAGAACAGAAGCAGCGCTGGCTGAAGGCCTTTGCCAG
AGAGAGGGAGCAGGTGCGGCTGGACCAGGAGACAGGCTTCTCCATCACCGAGCTGCAGAGGAAGCAGGCC
ATGCTGAACGCCAGCAAGCAGCAGGCCACGGGGAAGCCTAAAGCTGTGGGAAGGCCAGGATACCTGACCC
GCCACAAGCATCCATCATTGCCTGCCAGCCGGCCCCAGCAGCAAGTGTTGGTGCTAGCAGAGCCCAGGCG
GAAGCCATCTAACTTCTGGCACAGCATCAGCAGACTGGCGCCTTTCCGCAAGTGA

Translation (484 aa):
MDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQDEPADDYEAPRAGAREADDSGPE
AQSCKDQMRTNVINEILSTERDYIKHLRDICEGYVRQCRKREDMFSEEQLRTIFGNIEDIYRCQKAFVKA
LEQKFNTERPHLSELGACFLEHQADFQIYSEYCNNHPNACVELSRLTKLSKYVYFFEACRLLQRMIDISL
DGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKNVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIE
DWEGEDLLVRSSELIHSGELTRVTQPQARSQQRMFFLFDRQLIYCKKDLLRRDVLYYKGRLDMDDLEVVD
VEDGKDRDLHVSVKNAFRLYCGTTGDSHLLCARKPEQKQRWLKAFAREREQVRLDQETGFSITELQRKQA
MLNASKQQATGKPKAVGRPGYLTRHKHPSLPASRPQQQVLVLAEPRRKPSNFWHSISRLAPFRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH