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Report for CCDS20374.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20374.1 Public Mus musculus 6 Rbsn 23 108 98 CCDS HistoryNCBI Gene:78287Re-query CCDS DB by CCDS ID:20374.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20374.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000014694.10 ENSMUSP00000014694.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000014694.10Link to Ensembl Protein Viewer:ENSMUSP00000014694.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000014694Re-query CCDS DB by Protein ID:ENSMUSP00000014694
Original member Current member NCBI NM_030081.3 NP_084357.2 Accepted alive Link to Nucleotide Sequence:NM_030081.3Link to Protein Sequence:NP_084357.2Re-query CCDS DB by Nucleotide ID:NM_030081Re-query CCDS DB by Protein ID:NP_084357Link to BLAST:NP_084357.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084357.2 783 Q80Y56 783 100% 0 0

Chromosomal Locations for CCDS 20374.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 92189310 92190458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92191249 92191353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92193129 92193231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92193944 92194030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92198184 92198254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92199694 92199935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92201472 92201633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92201732 92201777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92202570 92202670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92207045 92207185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92211588 92211732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2352 nt):
ATGGCATCTCTTGATGACCCAGGGGAGGTGAGGGAAGGCTTCCTGTGCCCTTTGTGCCTGAAGGACCTTC
AGTCTTTCTATCAACTTCAGTCACATTATGAGGAAGAACACTTGGAAGATCGTGATGTCAAAGGGCAAAT
TAAAAATCTTGTTCAGAAGGCTAGGAAAGCAAAGAACAAGTTGTTGAAACGAGAAGGAGATGATCGAGTG
GAACCAGGGACCCAAGGATATGAATCATTCAGTTATGGTGGGGTTGATCCTTACATGTGGGAACCCCAAG
AGCTTGGTGCTATGAGAAGCCATCTTTCTGACTTCAAAAAACATCGTGCTGCAAGAATTGACCACTATGT
TGTTGAAGTCAATAAATTAATCATCAGGTTGGAAAAGCTTACTGCATTTGACAGAACAAATACTGAGACT
TCAAAGATTAGAGCAATAGAAAAGTCCGTGGTGCCTTGGGTCAATGACCAGGATGTCCCCTTCTGTCCAG
ACTGTGGGAATAAATTCAGCATCCGGAACCGCCGTCACCACTGCCGCCTCTGTGGGTCTATCATGTGCAA
GAAGTGTATGGAGCTCATCGGCCTGCCCTTAGCACATAAGCTCACCAGTGCCAGCAAGGACTCTCTGAGC
ACCCACACCAGCCCCAGCCAGTCTCCTAACAGTGTCCATGGCTCCCGCCGGGGCAGCATCAGCAGCATGA
GCAGTGTCAGCTCAGTCCTAGACGAGAAGGATGATGACCGCATCCGCTGCTGCACACACTGCAAGGACAA
GCTGCTCAAGCGAGAGCAGCAGATGGACGAGAAGGAGCACACGCCTGACATCGTGAAGCTCTACGAGAAA
CTTCGGCTTTGCATGGAGAAAGTTGACCAGAAAGCTCCCGAATACATCAGGATGGCAGCATCTTTAAATG
CTGGGGAGACGACCTACAATCTGGAGCATGCCAATGACCTTCGAGTGGAAGTGCAGAAAGTATATGAGCT
AATAGACGCTTTAAGTAAGAAGATCTTAACCTTGGGCTTGAACCAAGACCCTTCACCACATCCAAACACT
TTGCGGCTACAGAGAATGATCAGATACTCAGCTACATTATTTGTGCAGGAAAAGTTACTGGGTTTGATGT
CACTGCCAACCAAAGAACAGTTTGAAGAACTGAAAAAGAAAAGGAAGCAGGACCTGGAGCAGAAGAGGAC
CGTGGAGAGACAGGCTGCTCTGGAGTCACGGCGGAAGCTTGAGGAAAGGCAGAGTGGTTTGGCATCTCAT
ACAGCCAATGGGGACGTGAGGTCTCTTCGAGGCATCCCTCCCCCCTTGCGAAAGGCTGAGGGCTGGCTCC
CACTGTCAGAAGGTCAGGGACAGAGTGAAGATCCTGACCCTCTCCTCCAGCAGATCTATAACATTACATC
GTTCATCAGGCAGGCCAAGGCTGCAGGCCGCACAGATGAGGTGCGCACACTTCAGGAGAACCTGCGGCAG
CTGCAGGATGAGTATGACCAGCAGCAGACTGAGAAGGCCATTGAGCTGTCCCGGAAGCAGGCCGAGGAGG
AGGAGCTGCAGCGGGAGCAGCTACAGATGCTCCGCAAGCGAGAGCTTGAACGAGAACAGGAGCAGTTCCT
GGCAGCATCCCTGCAAACACGGACTCGTGTTCTAGAACTCCGAGAAGTTATACCCTTCCAATTGGAGGCC
AGTCGAGGGCCTCACATTGATCTCTCCTATTCCTTGGATCAGGACTCCTCCCCAGTTCAGAGCAGCACAG
CTCCTGATATCCTTACACCTGGCTCAGCTCTAGCACCCATGCACTTGTGGTCTGGGCCCCCAGCCCTTGG
CCAGGAAACACTCCCTCAGAGCACCATGTCACAGCAAAGTGATAAGGCCTCACTCAACCCGTTTGATGAA
GACGACCTCTCCAGCCCTACAGAGGGTGCTATCAGCCCTGCTGCTGTAGAGGCTTTCCTGGGCCCTCCAG
CTGCTGTCACCAAAGAATACAATCCTTTTGAGGAAGATGCTGAGGAAGAGGAGGTGGCAGAGTTGGGGGC
AGGAAATCCCTTCACCGACCCAGACAGTCCAGCACCCAACCCTTTTGATGAGGATGACGGTCCCAGGCCT
GCCAGTCCAGCCGCCCCTGGAAACCCTTTTGAAGAGTGCCCCTCCACCAACCCCTTCGAGGTGGACAGTG
ATAGTGGCATGGAGGCCGAGGAACACATCGAGGAGGAGCTGCTCCTGCAGCAAATTGACAACATCAAGGC
TTACATCTTTGATGCCAAGCAGTGTGGGCGAATGGACGAGGTTGAGGTTCTAACGGAGAACCTCCGGGAG
CTGAAGTGCACCCTGGCTAAGCAGAAGGGGGCCCCTAATTGA

Translation (783 aa):
MASLDDPGEVREGFLCPLCLKDLQSFYQLQSHYEEEHLEDRDVKGQIKNLVQKARKAKNKLLKREGDDRV
EPGTQGYESFSYGGVDPYMWEPQELGAMRSHLSDFKKHRAARIDHYVVEVNKLIIRLEKLTAFDRTNTET
SKIRAIEKSVVPWVNDQDVPFCPDCGNKFSIRNRRHHCRLCGSIMCKKCMELIGLPLAHKLTSASKDSLS
THTSPSQSPNSVHGSRRGSISSMSSVSSVLDEKDDDRIRCCTHCKDKLLKREQQMDEKEHTPDIVKLYEK
LRLCMEKVDQKAPEYIRMAASLNAGETTYNLEHANDLRVEVQKVYELIDALSKKILTLGLNQDPSPHPNT
LRLQRMIRYSATLFVQEKLLGLMSLPTKEQFEELKKKRKQDLEQKRTVERQAALESRRKLEERQSGLASH
TANGDVRSLRGIPPPLRKAEGWLPLSEGQGQSEDPDPLLQQIYNITSFIRQAKAAGRTDEVRTLQENLRQ
LQDEYDQQQTEKAIELSRKQAEEEELQREQLQMLRKRELEREQEQFLAASLQTRTRVLELREVIPFQLEA
SRGPHIDLSYSLDQDSSPVQSSTAPDILTPGSALAPMHLWSGPPALGQETLPQSTMSQQSDKASLNPFDE
DDLSSPTEGAISPAAVEAFLGPPAAVTKEYNPFEEDAEEEEVAELGAGNPFTDPDSPAPNPFDEDDGPRP
ASPAAPGNPFEECPSTNPFEVDSDSGMEAEEHIEEELLLQQIDNIKAYIFDAKQCGRMDEVEVLTENLRE
LKCTLAKQKGAPN


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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