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Report for CCDS43991.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43991.1 Public Homo sapiens X DCAF12L2 24 110 108 CCDS HistoryNCBI Gene:340578Re-query CCDS DB by CCDS ID:43991.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43991.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360028.4 ENSP00000353128.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360028.4Link to Ensembl Protein Viewer:ENSP00000353128.2Re-query CCDS DB by Nucleotide ID:ENST00000360028Re-query CCDS DB by Protein ID:ENSP00000353128
Original member Current member NCBI NM_001013628.3 NP_001013650.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001013628.3Link to Protein Sequence:NP_001013650.1Re-query CCDS DB by Nucleotide ID:NM_001013628Re-query CCDS DB by Protein ID:NP_001013650Link to BLAST:NP_001013650.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013650.1 463 Q5VW00 463 100% 0 0

Chromosomal Locations for CCDS 43991.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 126164533 126165924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1392 nt):
ATGGCCCAGCAGCAAACAGGTAGCAGGAAACGGAAAGCGCCCGCGGTCGAGGCGGGAGCCGGGAGCTCGT
CGTCGCAGGGTTTAGCGGCGGCGGACGGAGAGGGGCCTCTGCTACCCAAGAAGCAGAAGCGGCCGGCGAC
GCGTCGCAGGCTGGTGCACTATCTGAAGGGCCGGGAGGTAGGAGCGCGGGGCCCAGCCGGGCTCCAGGGC
TTCGAGGGCGAGCTGCGGGGCTACGCCGTCCAGAGGCTGCCCGAGCTGCTGACGGAGCGCCAGCTGGACC
TGGGCACCCTCAACAAGGTGTTCGCGTCACAGTGGCTGAACGCCAGGCAGGTGGTGTGCGGCACCAAGTG
TAATACGCTGTTTGTGGTGGACGTGCAGTCAGGCCACATCACGCGCATCCCCCTCATGCGGGACAAGGAG
GCCGGGCTGGCCCAGGCCCACCAGGGCTGCGGCATCCATGCCATCGAGCTGAATCCCTCCAAGACGCTTC
TGGCCACCGGCGGCGAAAACCCCAACAGCCTGGCCATCTACCAGCTGCCCACCCTGGACCCCCTGTGCCT
GGGCGACCGCCATGGCCACAAGGACTGGATCTTCGCAGTCGCCTGGCTGAGTGACACCGTAGCTGTGAGC
GGCTCCCGCGACGGCACCGTGGCTCTGTGGCGGATGGACCCAGACATGTTTAATGGCAGCATTGCCTGGC
ACAGCGAGGTGGGTCTCCCAGTATATGCCCACATCCGTCCGAGGGATGTGGAGGCCATCCCCAGGGCCAG
CACCAACCCCAGCAACCGCAAGGTACGGGCCCTGGCCTTCAGCGGCAAGAACCAGGAGCTGGGAGCGGTG
TCCTTGGACGGCTACTTCCACCTGTGGAAAGCCCGGAGCACACTATCCAGGCTCCTGTCCATCAGGCTGC
CCTACTGCCGAGAGAATGTGTGCCTGACCTACTGTGATGAGTTGTCCCTGTACGCTGTGGGCTCTCAGTC
CCACGTCTCCTTCCTGGATCCGCGCCAGCGCCAGCAGAACATCCGGCCCCTGTGCTCTCGAGAGGGTGGC
ACAGGCGTGCGGTCGCTGAGCTTCTACCAGCACATCATCACTGTGGGCACCGGCCATGGTTCCCTGCTCT
TCTATGACATCCGCGCCCAGAAGTTCCTGGAGGAGAGGGCCTCTTCCAGCCTGGACTCCATGCCGGGGCC
CGCAGGGAGGAAGCTCAAGCTTGCCTGCGGCAGAGGCTGGCTCAACCAAGATGACGTCTGGGTGAACTAC
TTTGGTGGCATGGGAGAGTTCCCCAATGCGCTCTACACCCACTGCTACAACTGGCCGGAGATGAAGCTCT
TTGTGGCTGGGGGGCCTCTCCCTTCAGGCCTCCATGGGAACTACGCAGGCCTCTGGAGTTAA

Translation (463 aa):
MAQQQTGSRKRKAPAVEAGAGSSSSQGLAAADGEGPLLPKKQKRPATRRRLVHYLKGREVGARGPAGLQG
FEGELRGYAVQRLPELLTERQLDLGTLNKVFASQWLNARQVVCGTKCNTLFVVDVQSGHITRIPLMRDKE
AGLAQAHQGCGIHAIELNPSKTLLATGGENPNSLAIYQLPTLDPLCLGDRHGHKDWIFAVAWLSDTVAVS
GSRDGTVALWRMDPDMFNGSIAWHSEVGLPVYAHIRPRDVEAIPRASTNPSNRKVRALAFSGKNQELGAV
SLDGYFHLWKARSTLSRLLSIRLPYCRENVCLTYCDELSLYAVGSQSHVSFLDPRQRQQNIRPLCSREGG
TGVRSLSFYQHIITVGTGHGSLLFYDIRAQKFLEERASSSLDSMPGPAGRKLKLACGRGWLNQDDVWVNY
FGGMGEFPNALYTHCYNWPEMKLFVAGGPLPSGLHGNYAGLWS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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