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Report for CCDS4265.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4265.1 Public Homo sapiens 5 RELL2 24 110 108 CCDS HistoryNCBI Gene:285613Re-query CCDS DB by CCDS ID:4265.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4265.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297164.8 ENSP00000297164.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000297164.8Link to Ensembl Protein Viewer:ENSP00000297164.3Re-query CCDS DB by Nucleotide ID:ENST00000297164Re-query CCDS DB by Protein ID:ENSP00000297164
Original member Current member EBI ENST00000444782.5 ENSP00000409443.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000444782.5Link to Ensembl Protein Viewer:ENSP00000409443.1Re-query CCDS DB by Nucleotide ID:ENST00000444782Re-query CCDS DB by Protein ID:ENSP00000409443
Original member Current member NCBI NM_001130029.2 NP_001123501.1 Accepted alive Link to Nucleotide Sequence:NM_001130029.2Link to Protein Sequence:NP_001123501.1Re-query CCDS DB by Nucleotide ID:NM_001130029Re-query CCDS DB by Protein ID:NP_001123501Link to BLAST:NP_001123501.1
Original member Current member NCBI NM_173828.5 NP_776189.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173828.5Link to Protein Sequence:NP_776189.3Re-query CCDS DB by Nucleotide ID:NM_173828Re-query CCDS DB by Protein ID:NP_776189Link to BLAST:NP_776189.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123501.1 303 Q8NC24 303 100% 0 0
NP_776189.3 303 Q8NC24 303 100% 0 0

Chromosomal Locations for CCDS 4265.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141638226 141638409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141638795 141638860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141638955 141639021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141639464 141639649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141639920 141640295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141640412 141640444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (912 nt):
ATGTCGGAACCACAGCCTGACCTGGAACCGCCCCAACATGGGCTATATATGCTCTTCCTGCTTGTGCTGG
TCTTCTTCCTCATGGGCCTGGTAGGCTTCATGATCTGCCACGTGCTCAAGAAGAAGGGCTACCGCTGCCG
CACGTCGAGGGGCTCTGAGCCTGACGATGCCCAGCTTCAGCCCCCTGAGGACGATGACATGAATGAGGAC
ACAGTAGAGAGGATTGTTCGCTGCATCATCCAGAATGAAGCCAATGCTGAGGCCTTGAAGGAGATGCTGG
GGGACAGTGAAGGAGAAGGGACAGTGCAGCTGTCCAGTGTGGATGCCACCTCCAGCCTGCAGGACGGAGC
CCCCTCCCATCATCACACAGTGCACCTGGGCTCTGCAGCCCCTTGCCTCCATTGCAGCCGCAGCAAGAGG
CCTCCACTTGTCCGTCAGGGACGCTCCAAGGAAGGAAAAAGCCGCCCCCGGACAGGGGAGACCACTGTGT
TCTCTGTGGGCAGGTTCCGGGTGACACACATTGAGAAGCGCTATGGACTGCACGAACACCGTGATGGCTC
CCCCACAGACAGGAGCTGGGGCTCTGGTGGGGGACAGGACCCAGGGGGTGGTCAGGGGTCTGGGGGAGGG
CAGCCCAAGGCAGGGATGCCTGCCATGGAGAGGCTGCCCCCTGAGAGGCCACAGCCCCAGGTCCTAGCCA
GCCCCCCAGTACAGAATGGAGGACTCAGGGACAGCAGCCTAACCCCTCGTGCACTTGAAGGGAACCCCAG
AGCTTCTGCAGAGCCAACACTGAGGGCCGGAGGGAGGGGCCCAAGCCCAGGGCTGCCCACTCAAGAGGCA
AATGGGCAGCCAAGCAAACCAGACACTTCTGATCACCAGGTGTCTCTACCACAGGGAGCAGGGAGTATGT
GA

Translation (303 aa):
MSEPQPDLEPPQHGLYMLFLLVLVFFLMGLVGFMICHVLKKKGYRCRTSRGSEPDDAQLQPPEDDDMNED
TVERIVRCIIQNEANAEALKEMLGDSEGEGTVQLSSVDATSSLQDGAPSHHHTVHLGSAAPCLHCSRSKR
PPLVRQGRSKEGKSRPRTGETTVFSVGRFRVTHIEKRYGLHEHRDGSPTDRSWGSGGGQDPGGGQGSGGG
QPKAGMPAMERLPPERPQPQVLASPPVQNGGLRDSSLTPRALEGNPRASAEPTLRAGGRGPSPGLPTQEA
NGQPSKPDTSDHQVSLPQGAGSM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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