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Report for CCDS54914.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54914.1 Public Homo sapiens 5 PCDHA2 24 110 108 CCDS HistoryNCBI Gene:56146Re-query CCDS DB by CCDS ID:54914.1Re-query CCDS DB by GeneID:56146See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54914.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000526136.2 ENSP00000431748.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000526136.2Link to Ensembl Protein Viewer:ENSP00000431748.1Re-query CCDS DB by Nucleotide ID:ENST00000526136Re-query CCDS DB by Protein ID:ENSP00000431748
Original member Current member NCBI NM_018905.3 NP_061728.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018905.3Link to Protein Sequence:NP_061728.1Re-query CCDS DB by Nucleotide ID:NM_018905Re-query CCDS DB by Protein ID:NP_061728Link to BLAST:NP_061728.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061728.1 948 Q9Y5H9-1 948 100% 0 0

Chromosomal Locations for CCDS 54914.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 140794965 140797352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140978949 140979007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140982475 140982563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141009627 141009937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2847 nt):
ATGGCGTCTTCTATCAGAAGGGGCCGAGGGGCCTGGACACGGCTGCTCTCGCTTCTGCTCCTCGCAGCCT
GGGAGGTGGGGAGCGGCCAGCTCCGCTACTCCGTCCCCGAGGAGGCCAAACACGGCACCTTCGTGGGCCG
CATCGCGCAGGACCTGGGGCTGGAGCTGGAGGAGCTGGTGCCGCGCCTGTTCCGGGTGGCGTCCAAAAGA
CACGGGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGGGAGG
AGCTGTGCGGGCGGAGCGCGGAATGTAGCATCCACGTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTT
CCATGTGGAAGTGGAGGTGAAGGACATTAACGACAACCCGCCAATATTTCCAATGACAGTAAAGACTATC
CGGTTTCCCGAATCAAGGCTGCTTGATTCTCGGTTTCCTCTAGAGGGAGCATCTGATGCAGATATAGGAG
TAAATGCTCTTCTCTCCTACAAGCTCAGCTCCAGTGAGTTTTTCTTCCTAGATATACAGGCAAATGATGA
ACTAAGCGAATCTTTGTCTCTCGTGCTGGGGAAATCGCTGGACAGAGAGGAAACTGCTGAGGTTAATTTG
TTACTGGTGGCTACTGATGGGGGCAAACCTGAGCTCACGGGCACCGTTCAAATACTTATTAAGGTATTAG
ATGTAAATGACAATGAACCAACTTTTGCCCAATCAGTTTACAAAGTAAAATTGTTAGAGAATACGGCAAA
TGGGACCTTAGTGGTTAAGTTAAACGCTTCTGATGCAGATGAAGGACCGAACAGCGAGATTGTGTATTCA
CTCGGTAGTGATGTGTCCTCCACTATACAGACTAAGTTTACCATAGATCCCATCTCAGGGGAAATCAGAA
CTAAGGGAAAATTAGATTATGAAGAAGCAAAGTCCTACGAGATTCAGGTCACTGCAACTGACAAAGGAAC
CCCTTCAATGTCAGGACATTGTAAAATTTCATTAAAACTTGTGGACATCAATGATAACACACCAGAAGTC
TCAATAACGTCTCTCTCACTTCCCATCTCAGAGAACGCTTCCCTGGGCACTGTCATTGCTCTCATCACGG
TGTCGGATCGCGACTCTGGTACGAATGGACATGTCACCTGCTCCCTGACGCCCCACGTCCCTTTCAAGCT
GGTGTCCACCTTCAAGAATTACTACTCGTTGGTGCTGGACAGCGCCCTGGACCGCGAGAGCGTGTCAGCC
TATGAGCTGGTGGTGACCGCACGGGACGGGGGCTCGCCTTCACTGTGGGCCACCACCAGCGTGTCCATCG
AGGTGGCCGACGTGAACGACAACGCGCCGGCGTTCGCACAGCCTGAGTACACAGTATTCGTGAAGGAGAA
CAACCCGCCGGGCTGCCACATCTTCACGGTGTCAGCGTGGGATGCGGACGCGCAGGAGAACGCGCTGGTG
TCCTACTCGCTGGTGGAGCGGCGGGTGGGCGAGCGCGCGTTGTCGAGCTACGTTTCGGTGCACGCGGAGA
GCGGCAAGGTGTACGCGCTGCAGCCGCTGGACCACGAGGAAGTGGAGCTGCTGCAGTTCCAGGTGAGCGC
GCGGGATGCGGGCGTGCCGCCTCTGGGCAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGAC
AACGCGCCGGCACTGTTGGCGCCTAGGGCTGGCACCGCTGCTGGCGCAGTGAGTGAGCTGGTGCCGTGGT
CGGTGGGTGCAGGGCACGTGGTGGCGAAGGTGCGCGCAGTGGACGCTGACTCAGGCTACAACGCGTGGCT
TTCGTACGAGCTTCAGCTGGGTACTGGCAGCGCTCGCATCCCGTTCCGCGTGGGGCTATACACGGGTGAG
ATCAGCACGACACGTGCCCTAGACGAGGCTGACTCCCCTCGACACCGCCTACTCGTGCTGGTGAAGGACC
ACGGCGAACCAGCGTTGACAGCCACGGCCACCGTGTTAGTGTCGTTGGTGGAAAGTGGCCAGGCACCCAA
GGCCTCGTCGCGGGCGTGGGTGGGCGCCGCGGGCTCAGAGGCTACGCTGGTGGATGTCAACGTGTACCTG
ATCATCGCCATCTGCGCGGTATCCAGCCTGTTGGTGCTCACGGTGCTGCTGTACACTGCGCTGCGGTGCT
CGGTGCCACCCACCGAGGGTGCGCGCGCGCCAGGAAAGCCCACGCTGGTGTGCTCCAGCGCCGTGGGGAG
CTGGTCTTACTCGCAGCAGAGGCGGCAGAGGGTGTGCTCTGGGGAGGACCCCCCCAAGACGGACCTCATG
GCCTTCAGCCCTAGCTTATCTCAAGGTCCAGACTCCGCAGAAGAGAAACAGCTCTCAGAATCAGAATACG
TAGGAAAGCCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTC
TGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTA
TCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACA
GCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCAT
TATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGAC
TTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGG
AGAAAAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACCAGTGA

Translation (948 aa):
MASSIRRGRGAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELVPRLFRVASKR
HGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVEVEVKDINDNPPIFPMTVKTI
RFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFLDIQANDELSESLSLVLGKSLDREETAEVNL
LLVATDGGKPELTGTVQILIKVLDVNDNEPTFAQSVYKVKLLENTANGTLVVKLNASDADEGPNSEIVYS
LGSDVSSTIQTKFTIDPISGEIRTKGKLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEV
SITSLSLPISENASLGTVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA
YELVVTARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQENALV
SYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPLGSNVTLQVFVLDEND
NAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDADSGYNAWLSYELQLGTGSARIPFRVGLYTGE
ISTTRALDEADSPRHRLLVLVKDHGEPALTATATVLVSLVESGQAPKASSRAWVGAAGSEATLVDVNVYL
IIAICAVSSLLVLTVLLYTALRCSVPPTEGARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLM
AFSPSLSQGPDSAEEKQLSESEYVGKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTV
SSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSD
FITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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