NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, April 30, 2024, starting at 9:30 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21289.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21289.1 Public Mus musculus 7 Ldha 23 108 98 CCDS HistoryNCBI Gene:16828Re-query CCDS DB by CCDS ID:21289.1Re-query CCDS DB by GeneID:16828See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21289.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048209.15 ENSMUSP00000036386.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048209.15Link to Ensembl Protein Viewer:ENSMUSP00000036386.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000048209Re-query CCDS DB by Protein ID:ENSMUSP00000036386
Original member Current member EBI ENSMUST00000005051.5 ENSMUSP00000103267.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005051.5Link to Ensembl Protein Viewer:ENSMUSP00000103267.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000005051Re-query CCDS DB by Protein ID:ENSMUSP00000103267
Original member Current member NCBI NM_010699.2 NP_034829.1 Accepted alive Link to Nucleotide Sequence:NM_010699.2Link to Protein Sequence:NP_034829.1Re-query CCDS DB by Nucleotide ID:NM_010699Re-query CCDS DB by Protein ID:NP_034829Link to BLAST:NP_034829.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034829.1 332 P06151 332 100% 0 0

Chromosomal Locations for CCDS 21289.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 46847620 46847745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46848973 46849090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46850178 46850351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46850885 46851058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46851877 46851994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46853983 46854106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46854977 46855141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGGCAACCCTCAAGGACCAGCTGATTGTGAATCTTCTTAAGGAAGAGCAGGCTCCCCAGAACAAGATTA
CAGTTGTTGGGGTTGGTGCTGTTGGCATGGCTTGTGCCATCAGTATCTTAATGAAGGACTTGGCGGATGA
GCTTGCCCTTGTTGACGTCATGGAAGACAAACTCAAGGGCGAGATGATGGATCTCCAGCATGGCAGCCTC
TTCCTTAAAACACCAAAAATTGTCTCCAGCAAAGACTACTGTGTAACTGCGAACTCCAAGCTGGTCATTA
TCACCGCGGGGGCCCGTCAGCAAGAGGGGGAGAGCCGGCTCAACCTGGTCCAGCGAAACGTGAACATCTT
CAAGTTCATCATTCCCAACATTGTCAAGTACAGTCCACACTGCAAGCTGCTGATCGTCTCCAATCCAGTG
GATATCTTGACCTACGTGGCTTGGAAAATCAGTGGCTTTCCCAAAAACCGAGTAATTGGAAGTGGTTGCA
ATCTGGATTCAGCGCGGTTCCGTTACCTGATGGGAGAGAGGCTGGGGGTTCACGCGCTGAGCTGTCACGG
CTGGGTCCTGGGAGAACATGGCGACTCCAGTGTGCCTGTGTGGAGTGGTGTGAATGTTGCCGGCGTCTCC
CTGAAGTCTCTTAACCCAGAACTGGGCACTGACGCAGACAAGGAGCAGTGGAAGGAGGTTCACAAGCAGG
TGGTGGACAGTGCCTACGAGGTGATCAAGCTGAAAGGTTACACATCCTGGGCCATTGGCCTCTCTGTGGC
AGACTTGGCTGAGAGCATAATGAAGAACCTTAGGCGGGTGCATCCCATTTCCACCATGATTAAGGGTCTC
TATGGAATCAATGAGGATGTCTTCCTCAGTGTCCCATGTATCCTGGGACAAAATGGAATCTCGGATGTTG
TGAAGGTGACACTGACTCCTGAGGAAGAGGCCCGCCTGAAGAAGAGCGCAGACACCCTCTGGGGAATCCA
GAAGGAGCTGCAGTTCTAA

Translation (332 aa):
MATLKDQLIVNLLKEEQAPQNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSL
FLKTPKIVSSKDYCVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPHCKLLIVSNPV
DILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGWVLGEHGDSSVPVWSGVNVAGVS
LKSLNPELGTDADKEQWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGL
YGINEDVFLSVPCILGQNGISDVVKVTLTPEEEARLKKSADTLWGIQKELQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH