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    rps6kc1.L ribosomal protein S6 kinase, 52kDa, polypeptide 1 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 414462, updated on 11-Apr-2024

    Summary

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    Official Symbol
    rps6kc1.L
    Official Full Name
    ribosomal protein S6 kinase, 52kDa, polypeptide 1 L homeolog
    Primary source
    Xenbase:XB-GENE-985542
    Locus tag
    XELAEV_18026218mg
    See related
    EnsemblRapid:ENSXLAG00005027905
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    rpk118; s6pkh1; rps6kc1
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    Genomic context

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    See rps6kc1.L in Genome Data Viewer
    Location:
    chromosome: 5L
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5L NC_054379.1 (12049042..12148381)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5L NC_030732.1 (11331917..11431587)

    Chromosome 5L - NC_054379.1Genomic Context describing neighboring genes Neighboring gene vasohibin 2 L homeolog Neighboring gene angel homolog 2 L homeolog Neighboring gene prospero homeobox 1 L homeolog Neighboring gene uncharacterized LOC121393602 Neighboring gene SET and MYND domain containing 2 L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC81290

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in early endosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ribosomal protein S6 kinase, 52kDa, polypeptide 1 L homeolog
    NP_001084515.1
    XP_018117286.1
    XP_018117287.1
    XP_018117288.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001091046.1 → NP_001084515.1  ribosomal protein S6 kinase, 52kDa, polypeptide 1 L homeolog

      See identical proteins and their annotated locations for NP_001084515.1

      Status: PROVISIONAL

      Source sequence(s)
      BC068771
      UniProtKB/TrEMBL
      Q6NU31
      Conserved Domains (3) summary
      cd07287
      Location:10 → 127
      PX_RPK118_like; The phosphoinositide binding Phox Homology domain of RPK118-like proteins
      cd02677
      Location:256 → 330
      MIT_SNX15; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
      cl21453
      Location:353 → 369
      PKc_like; Protein Kinases, catalytic domain

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054379.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      12049042..12148381
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018261797.2 → XP_018117286.1  ribosomal protein S6 kinase, 52kDa, polypeptide 1 L homeolog isoform X1

      UniProtKB/TrEMBL
      A0A1L8G6S4, A0A974CTF8
      Related
      ENSXLAP00005082980.1, ENSXLAT00005084619.1

    2. XM_018261798.2 → XP_018117287.1  ribosomal protein S6 kinase, 52kDa, polypeptide 1 L homeolog isoform X2

      UniProtKB/TrEMBL
      A0A8J0V855
      Related
      ENSXLAP00005083400.1, ENSXLAT00005085039.1

    3. XM_018261799.2 → XP_018117288.1  ribosomal protein S6 kinase, 52kDa, polypeptide 1 L homeolog isoform X3

      UniProtKB/TrEMBL
      A0A8J0V9F6
    Nucleotide Protein Strain
    Heading Accession and Version

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