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    TFAMP2 transcription factor A, mitochondrial pseudogene 2 [ Homo sapiens (human) ]

    Gene ID: 260340, updated on 10-Oct-2023

    Summary

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    Official Symbol
    TFAMP2provided by HGNC
    Official Full Name
    transcription factor A, mitochondrial pseudogene 2provided by HGNC
    Primary source
    HGNC:HGNC:11638
    See related
    AllianceGenome:HGNC:11638
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    MTTF1; TCF6L3
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    Genomic context

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    See TFAMP2 in Genome Data Viewer
    Location:
    11q22.3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (109905902..109907879, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (109916206..109918183, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (109776628..109778605, complement)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2715 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr11:109730175-109731374 Neighboring gene uncharacterized LOC105369483 Neighboring gene NANOG hESC enhancer GRCh37_chr11:109734840-109735483 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5494 Neighboring gene uncharacterized LOC105369484 Neighboring gene ribosomal protein SA pseudogene 50

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Human mitochondrial transcription factor A (mtTFA): gene structure and characterization of related pseudogenes. Reyes A, et al. Gene, 2002 May 29. PMID 12095695

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • processed pseudogene mtTFA 2
    • transcription factor 6-like 3 (mitochondrial transcription factor 1-like)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_007345.4 

      Range
      101..2078
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      109905902..109907879 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      109916206..109918183 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NR_001287.1: Suppressed sequence

      Description
      NR_001287.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein
    Heading Accession and Version

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