Structural basis of G-tract recognition and encaging by hnRNP F quasi-RRMs

Nat Struct Mol Biol. 2010 Jul;17(7):853-61. doi: 10.1038/nsmb.1814. Epub 2010 Jun 6.

Abstract

The heterogeneous nuclear ribonucleoprotein (hnRNP) F is involved in the regulation of mRNA metabolism by specifically recognizing G-tract RNA sequences. We have determined the solution structures of the three quasi-RNA-recognition motifs (qRRMs) of hnRNP F in complex with G-tract RNA. These structures show that qRRMs bind RNA in a very unusual manner, with the G-tract 'encaged', making the qRRM a novel RNA binding domain. We defined a consensus signature sequence for qRRMs and identified other human qRRM-containing proteins that also specifically recognize G-tract RNAs. Our structures explain how qRRMs can sequester G-tracts, maintaining them in a single-stranded conformation. We also show that isolated qRRMs of hnRNP F are sufficient to regulate the alternative splicing of the Bcl-x pre-mRNA, suggesting that hnRNP F would act by remodeling RNA secondary and tertiary structures.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alternative Splicing*
  • Amino Acid Motifs
  • Amino Acid Sequence
  • Base Sequence
  • Heterogeneous-Nuclear Ribonucleoproteins / chemistry*
  • Heterogeneous-Nuclear Ribonucleoproteins / metabolism*
  • Humans
  • Models, Molecular
  • Molecular Sequence Data
  • Nuclear Magnetic Resonance, Biomolecular
  • Nucleic Acid Conformation
  • Protein Structure, Tertiary
  • RNA / chemistry*
  • RNA / metabolism
  • Sequence Alignment
  • bcl-X Protein / metabolism

Substances

  • Heterogeneous-Nuclear Ribonucleoproteins
  • bcl-X Protein
  • RNA

Associated data

  • PDB/2KFY
  • PDB/2KG0
  • PDB/2KG1