Structural basis for induced-fit binding of Rho-kinase to the inhibitor Y-27632

J Biochem. 2006 Sep;140(3):305-11. doi: 10.1093/jb/mvj172. Epub 2006 Aug 4.

Abstract

Rho-kinase is a main player in the regulation of cytoskeletal events and a promising drug target in the treatment of both vascular and neurological disorders. Here we report the crystal structure of the Rho-kinase catalytic domain in complex with the specific inhibitor Y-27632. Comparison with the structure of PKA bound to this inhibitor revealed a potential induced-fit binding mode that can be accommodated by the phosphate binding loop. This binding mode resembles to that observed in the Rho-kinase-fasudil complex. A structural database search indicated that a pocket underneath the phosphate-binding loop is present that favors binding to a small aromatic ring. Introduction of such a ring group might spawn a new modification scheme of pre-existing protein kinase inhibitors for improved binding capability.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amides / chemistry*
  • Crystallography
  • Intracellular Signaling Peptides and Proteins / chemistry*
  • Models, Molecular*
  • Protein Serine-Threonine Kinases / chemistry*
  • Protein Structure, Tertiary
  • Pyridines / chemistry*
  • Substrate Specificity
  • rho-Associated Kinases

Substances

  • Amides
  • Intracellular Signaling Peptides and Proteins
  • Pyridines
  • Y 27632
  • Protein Serine-Threonine Kinases
  • rho-Associated Kinases

Associated data

  • PDB/2H9V