Nucleotide sequence analysis of the HLA class I region spanning the 237-kb segment around the HLA-B and -C genes

Genomics. 1997 May 15;42(1):55-66. doi: 10.1006/geno.1997.4708.

Abstract

To elucidate the detailed gene organization of the human leukocyte antigen (HLA) class I region on chromosome 6, seven contiguous cosmid genomic clones covering the 237-kb segment around the HLA-B and -C loci were subjected to DNA sequencing by the shotgun strategy to give a single contig of 236,822 bp from the MICA gene (58.2 kb centromeric of HLA-B) to 90.8 kb telomeric of HLA-C. This region was confirmed to contain four known genes, MICA, HLA-17, HLA-B, and HLA-C, from centromere to telomere. Further, a new member of the P5 multicopy genes was found to be about 1.3 kb upstream of the HLA-17 gene and designated P5.8. Five novel genes designated NOB1-5 were identified by RT-PCR and Northern blot hybridization. In addition, two pseudogenes, dihydrofolate reductase pseudogene (DHFRP) and ribosomal protein L3 homologous gene (RPL3-Hom), were also found in the vicinity of the HLA-B and -C genes, respectively. The two segments (about 40 kb) downstream of the HLA-B and HLA-C genes showed high sequence homology to each other, suggesting that segmental genome duplication including the major histocompatibility complex (MHC) class I gene must have occurred during the evolution of the MHC.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Blotting, Northern
  • Chromosomes, Artificial, Yeast / genetics
  • Chromosomes, Human, Pair 6 / genetics
  • Cloning, Molecular
  • Cosmids
  • DNA / genetics
  • Evolution, Molecular
  • HLA-B Antigens / genetics*
  • HLA-C Antigens / genetics*
  • Humans
  • Molecular Sequence Data
  • Multigene Family
  • Polymerase Chain Reaction
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism
  • Restriction Mapping
  • Ribosomal Protein L3
  • Sequence Analysis, DNA
  • Sequence Homology, Nucleic Acid
  • Tissue Distribution

Substances

  • HLA-B Antigens
  • HLA-C Antigens
  • RNA, Messenger
  • RPL3 protein, human
  • Ribosomal Protein L3
  • DNA

Associated data

  • GENBANK/D20302
  • GENBANK/D83543
  • GENBANK/D83769
  • GENBANK/D83770
  • GENBANK/D83771
  • GENBANK/D83956
  • GENBANK/D83957
  • GENBANK/D84394
  • GENBANK/F01164
  • GENBANK/F02121
  • GENBANK/L04965
  • GENBANK/L06175
  • GENBANK/L14848
  • GENBANK/L16869
  • GENBANK/L19691
  • GENBANK/L25647
  • GENBANK/L29406
  • GENBANK/L29410
  • GENBANK/L29411
  • GENBANK/M31944
  • GENBANK/M96339
  • GENBANK/S70603
  • GENBANK/T54086
  • GENBANK/T95975
  • GENBANK/U17338
  • GENBANK/U17339
  • GENBANK/U17341
  • GENBANK/V00585
  • GENBANK/X73460