Analysis and Validation of TMED3 correlates with poor prognosis and tumor immune infiltration of glioma

J Cancer Res Clin Oncol. 2023 Jul;149(7):3485-3494. doi: 10.1007/s00432-022-04257-x. Epub 2022 Aug 11.

Abstract

Background: Glioma is the most common primary intracranial tumor. It is notorious for its high degree of malignancy, strong invasion, and poor prognosis. The transmembrane emp24 trafficking protein 3 (TMED3) belongs to the TMED family, which is responsible for intracellular protein transport and innate immune signal transmission. More and more evidence shows that TMED3 plays a key role in the tumor progression of human cancer. However, the role and potential molecular mechanism of TMED3 in glioma have not been clarified.

Methods: TMED3 expression levels, clinical data, survival prognosis, prediction of upstream miRNA, and immune-related analyses were all analyzed utilizing relevant databases. Finally, a molecular cell experiment confirmed TMED3 expression in glioma.

Results: We discovered that TMED3 is overexpressed in most tumors, including gliomas, and is associated with tumor staging and prognosis. Subsequently, a combination of a series of bioinformatics analyses, including correlation and survival analyses, identified miR-1296-5p as the most potent upstream miRNA of TMED3 in gliomas.Additionally, we analyzed the relationship between TMED3 level and tumor immune cell infiltration and immune checkpoint expression.

Conclusion: TMED3 is highly expressed in gliomas and is associated with tumor staging and affects the prognosis of patients. Therefore, the TMED3 gene may be a potential immunotherapy target and prognostic marker for gliomas.

Keywords: Immune infiltration; Pan-cancer; Prognosis; TMED3.

MeSH terms

  • Brain Neoplasms* / genetics
  • Computational Biology
  • Databases, Factual
  • Glioma* / genetics
  • Humans
  • MicroRNAs* / genetics
  • Prognosis
  • Tumor Microenvironment
  • Vesicular Transport Proteins

Substances

  • MicroRNAs
  • TMED3 protein, human
  • Vesicular Transport Proteins