Combined analysis of expression, prognosis and immune infiltration of GINS family genes in human sarcoma

Aging (Albany NY). 2022 Jul 27;14(14):5895-5907. doi: 10.18632/aging.204191. Epub 2022 Jul 27.

Abstract

Objective: This study was undertaken to explore the expression and prognostic value of GINS family in human sarcoma, as well as the association between the expression levels of the GINS family and sarcoma immune infiltration.

Results: We discovered that the mRNA expression levels of GINS1, GINS2, GINS3, and GINS4 were all higher in the majority of tumor tissues than in normal samples, of course, including sarcoma. Through the CCLE, all the four members expression were observed in high levels in sarcoma cell lines. In Gene Expression Profiling Analysis (GEPIA) and Kaplan-Meier Plotter, our results indicated that the poor overall survival (OS), disease-free survival (DFS) and relapse free survival (RFS) were tightly associated with the increased expression of GINS genes. In TIMER database, we found that highly expressed GINS was significantly correlated with the low infiltration level of CD4+ T cell and macrophage.

Conclusions: The four GINS family members were all the prognostic biomarkers for the prognosis of human sarcoma and can reduce the level of immune cell infiltration in the sarcoma microenvironment.

Methods: In terms of the expression levels of mRNA for GINS family members, a particular contrast in various cancers, especially human sarcoma, was conducted through ONCOMINE and GEPIA and CCLE databases. Kaplan-Meier Plotter was used to identify the prognostic value of GINS family in sarcoma. The relationship between the expression level of GINS and the infiltration of immune cells was analyzed in TIMER database.

Keywords: GINS; expression level; prognosis; sarcoma.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biomarkers, Tumor / genetics
  • Chromosomal Proteins, Non-Histone / genetics
  • DNA-Binding Proteins
  • Humans
  • Liver Neoplasms* / genetics
  • Neoplasm Recurrence, Local
  • Prognosis
  • RNA, Messenger / genetics
  • Sarcoma* / genetics
  • Tumor Microenvironment / genetics

Substances

  • Biomarkers, Tumor
  • Chromosomal Proteins, Non-Histone
  • DNA-Binding Proteins
  • GINS1 protein, human
  • GINS2 protein, human
  • GINS3 protein, human
  • GINS4 protein, human
  • RNA, Messenger