Network-based meta-analysis and the candidate gene association studies reveal novel ethnicity-specific variants in MFSD3 and MRPL43 associated with dementia with Lewy bodies

Am J Med Genet B Neuropsychiatr Genet. 2022 Jul;189(5):139-150. doi: 10.1002/ajmg.b.32908. Epub 2022 Jun 28.

Abstract

Dementia with Lewy bodies (DLB) is the second most common form of neurodegenerative dementia in elderly people, following Alzheimer's disease. Only three genes, SNCA (α-synuclein), APOE (apolipoprotein E), and GBA (glucosylceramidase), have been convincingly demonstrated to be associated with DLB. Here, we applied whole-genome sequencing to blood samples from 61 DLB patients and 45 cognitively normal controls. We used accumulation of candidate mutations to detect novel DLB-associated genes. Subsequent single nucleotide polymorphism (SNP) genotyping and association studies in a large number of samples from Japanese individuals revealed novel heterozygous variants in MFSD3 (rs143475431, c.888T>A:p.C296*; n = 5,421, p = 0.00063) and MRPL43 (chr10:102746730, c.241A>C:p.N81H; n = 4,782, p = 0.0029). We further found that the MFSD3 variant increased plasma levels of butyrylcholinesterase (n = 1,206, p = 0.029). We believe that our findings will contribute to the understanding of DLB and provide insight into its pathogenic mechanism for future studies.

Keywords: candidate gene association studies; dementia with Lewy bodies; network-based meta-analysis; whole-genome sequencing.

Publication types

  • Meta-Analysis
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aged
  • Butyrylcholinesterase / genetics
  • Ethnicity
  • Genetic Association Studies
  • Humans
  • Japan
  • Lewy Body Disease* / ethnology
  • Lewy Body Disease* / genetics
  • Membrane Transport Proteins* / genetics
  • Mitochondrial Proteins* / genetics
  • Network Meta-Analysis
  • Polymorphism, Single Nucleotide
  • Ribosomal Proteins* / genetics

Substances

  • Butyrylcholinesterase
  • Membrane Transport Proteins
  • Mitochondrial Proteins
  • MRPL43 protein, human
  • Ribosomal Proteins
  • MFSD3 protein, human