Bioinformatic Prediction of Novel Signaling Pathways of Apoptosis-inducing Factor, Mitochondrion-associated 3 (AIFM3) and Their Roles in Metastasis of Cholangiocarcinoma Cells

Cancer Genomics Proteomics. 2022 Jan-Feb;19(1):35-49. doi: 10.21873/cgp.20302.

Abstract

Background/aim: We previously demonstrated that a mitochondrial protein, apoptosis-inducing factor, mitochondrion-associated 3 (AIFM3) is over-expressed in cholangiocarcinoma (CCA) and its serum levels can be a prognostic biomarker for CCA. To elucidate the functional roles of AIFM3 in CCA progression, we aimed to determine the signaling pathways of AIFM3 in CCA.

Materials and methods: AIFM3 gene in CCA cells was silenced and AIFM3-related proteins were identified using mass spectrometry and bioinformatics tools. The relationships between AIFM3 and 441 related proteins were explored. To validate the functions of AIFM3, transwell migration/invasion assays were used.

Results: Bioinformatic analyses predicted that AIFM3 interacts with formin-like protein 3 (FMNL3) and is involved in tumor cell motilities. Online database analysis revealed higher AIFM3 mRNA expression levels in CCA, particularly with lymph node metastasis. After AIFM3 gene silencing, CCA cell migration/invasion was significantly decreased (p<0.001). Furthermore, AIFM3 expression levels were significantly associated with lymph node metastasis (p=0.0009) and shorter survival time (p=0.020).

Conclusion: The AIFM3 signaling pathway is mediated via FMNL3 and involved in metastasis, suggesting that AIFM3 might be a molecular target to prevent CCA metastasis.

Keywords: AIFM3; Cholangiocarcinoma; bioinformatics; mass spectrometry; metastasis; signaling pathway.

MeSH terms

  • Bile Duct Neoplasms / pathology*
  • Bile Duct Neoplasms / surgery
  • Bile Ducts, Intrahepatic / pathology
  • Bile Ducts, Intrahepatic / surgery
  • Cell Line, Tumor
  • Cell Movement
  • Cholangiocarcinoma / secondary*
  • Cholangiocarcinoma / surgery
  • Computational Biology
  • Formins / metabolism*
  • Gene Expression Profiling
  • Gene Knockdown Techniques
  • Humans
  • Lymphatic Metastasis / pathology*
  • Mitochondrial Proteins / genetics
  • Mitochondrial Proteins / metabolism*
  • Molecular Docking Simulation
  • Prognosis
  • Signal Transduction

Substances

  • AIFM3 protein, human
  • FMNL3 protein, human
  • Formins
  • Mitochondrial Proteins