H3K4 demethylation by Jarid1a and Jarid1b contributes to retinoblastoma-mediated gene silencing during cellular senescence

Proc Natl Acad Sci U S A. 2012 Jun 5;109(23):8971-6. doi: 10.1073/pnas.1119836109. Epub 2012 May 21.

Abstract

Cellular senescence is a tumor-suppressive program that involves chromatin reorganization and specific changes in gene expression that trigger an irreversible cell-cycle arrest. Here we combine quantitative mass spectrometry, ChIP deep-sequencing, and functional studies to determine the role of histone modifications on chromatin structure and gene-expression alterations associated with senescence in primary human cells. We uncover distinct senescence-associated changes in histone-modification patterns consistent with a repressive chromatin environment and link the establishment of one of these patterns--loss of H3K4 methylation--to the retinoblastoma tumor suppressor and the H3K4 demethylases Jarid1a and Jarid1b. Our results show that Jarid1a/b-mediated H3K4 demethylation contributes to silencing of retinoblastoma target genes in senescent cells, suggesting a mechanism by which retinoblastoma triggers gene silencing. Therefore, we link the Jarid1a and Jarid1b demethylases to a tumor-suppressor network controlling cellular senescence.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Cell Line
  • Cellular Senescence / physiology*
  • Chromatin / metabolism*
  • Chromatin Immunoprecipitation
  • Gene Expression Regulation / genetics*
  • Gene Silencing / physiology*
  • Genetic Vectors
  • High-Throughput Nucleotide Sequencing
  • Histones / metabolism*
  • Humans
  • Immunoblotting
  • Jumonji Domain-Containing Histone Demethylases / metabolism*
  • Mass Spectrometry
  • Methylation
  • Nuclear Proteins / metabolism*
  • Repressor Proteins / metabolism*
  • Retinoblastoma-Binding Protein 2 / metabolism*
  • Retroviridae
  • Reverse Transcriptase Polymerase Chain Reaction
  • Sequence Analysis, DNA

Substances

  • Chromatin
  • Histones
  • Nuclear Proteins
  • Repressor Proteins
  • Jumonji Domain-Containing Histone Demethylases
  • KDM5A protein, human
  • KDM5B protein, human
  • Retinoblastoma-Binding Protein 2