In vitro selection of adenine-dependent ribozyme against Tpl2/Cot oncogene

FEBS J. 2009 Jan;276(1):303-14. doi: 10.1111/j.1742-4658.2008.06780.x. Epub 2008 Nov 28.

Abstract

Hairpin ribozymes possess the properties of RNA sequence-specific recognition and site-specific cleavage. These properties make them a powerful extension of the antisense approach for the inhibition of gene expression. From a randomized RNA pool of hairpin ribozymes, using the systematic evolution of ligands by exponential enrichment, we have obtained an adenine-dependent hairpin ribozyme, Tpl2/Cot (tumour progression locus 2) ribozyme, which cleaves the Tpl2/Cot kinase mRNA sequence at nucleotides A225/G226 relative to the start codon of translation. This serine/threonine kinase activates the mitogen-activated protein kinase pathway implicated in cell proliferation in cancer. The selected 'Tpl2/Cot-YL ribozyme' efficiently cleaves its target sequence in cis and in trans; furthermore, the ribozyme efficiently cleaves a longer target sequence of 54 nucleotides in trans, as well as the full-length mRNA.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenine / pharmacology*
  • Base Sequence
  • Conserved Sequence
  • Humans
  • Hydrogen-Ion Concentration
  • Kinetics
  • MAP Kinase Kinase Kinases / drug effects
  • MAP Kinase Kinase Kinases / genetics*
  • Magnesium Chloride / pharmacology
  • Models, Molecular
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Proto-Oncogene Proteins / drug effects
  • Proto-Oncogene Proteins / genetics*
  • Proto-Oncogenes*
  • RNA, Catalytic / genetics*
  • RNA, Catalytic / metabolism
  • RNA, Messenger / genetics*
  • Sequence Alignment
  • Sequence Homology, Nucleic Acid

Substances

  • Proto-Oncogene Proteins
  • RNA, Catalytic
  • RNA, Messenger
  • Magnesium Chloride
  • MAP Kinase Kinase Kinases
  • MAP3K8 protein, human
  • Adenine