Identification of a human cytoplasmic poly(A) nuclease complex stimulated by poly(A)-binding protein

J Biol Chem. 2004 Jan 9;279(2):1383-91. doi: 10.1074/jbc.M309125200. Epub 2003 Oct 28.

Abstract

The poly(A) tail shortening in mRNA, called deadenylation, is the first rate-limiting step in eukaryotic mRNA turnover, and the polyadenylate-binding protein (PABP) appears to be involved in the regulation of this step. However, the precise role of PABP remains largely unknown in higher eukaryotes. Here we identified and characterized a human PABP-dependent poly(A) nuclease (hPAN) complex consisting of catalytic hPan2 and regulatory hPan3 subunits. hPan2 has intrinsically a 3' to 5' exoribonuclease activity and requires Mg2+ for the enzyme activity. On the other hand, hPan3 interacts with PABP to simulate hPan2 nuclease activity. Interestingly, the hPAN nuclease complex has a higher substrate specificity to poly(A) RNA upon its association with PABP. Consistent with the roles of hPan2 and hPan3 in mRNA decay, the two subunits exhibit cytoplasmic co-localization. Thus, the human PAN complex is a poly(A)-specific exoribonuclease that is stimulated by PABP in the cytoplasm.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • COS Cells
  • Caenorhabditis elegans
  • Catalysis
  • Cloning, Molecular
  • Cytoplasm / metabolism
  • DNA / metabolism
  • Dose-Response Relationship, Drug
  • Drosophila melanogaster
  • Exoribonucleases / chemistry
  • Exoribonucleases / physiology*
  • HeLa Cells
  • Humans
  • Magnesium / chemistry
  • Magnesium / metabolism
  • Microscopy, Fluorescence
  • Molecular Sequence Data
  • Plasmids / metabolism
  • Poly(A)-Binding Proteins / chemistry
  • Poly(A)-Binding Proteins / metabolism
  • Precipitin Tests
  • Protein Binding
  • Protein Structure, Tertiary
  • RNA / chemistry
  • RNA, Messenger / metabolism
  • Recombinant Proteins / chemistry
  • Saccharomyces cerevisiae / metabolism
  • Sequence Homology, Amino Acid
  • Substrate Specificity
  • Time Factors
  • Transfection

Substances

  • Poly(A)-Binding Proteins
  • RNA, Messenger
  • Recombinant Proteins
  • RNA
  • DNA
  • Exoribonucleases
  • poly(A)-specific ribonuclease
  • Magnesium

Associated data

  • GENBANK/AB107584
  • GENBANK/AB107585