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Items: 1 to 20 of 36

1.
What we can see from very small size sample of metagenomic sequences
Jaesik Kwak, Joonhong Park
BMC Bioinformatics. 2018; 19: 399. Published online 2018 Nov 3. doi: 10.1186/s12859-018-2431-8
PMCID:
PMC6215618
AbstractArticlePDF–1.8M
2.
The BioCyc collection of microbial genomes and metabolic pathways
Peter D Karp, Richard Billington, Ron Caspi, Carol A Fulcher, Mario Latendresse, Anamika Kothari, Ingrid M Keseler, Markus Krummenacker, Peter E Midford, Quang Ong, Wai Kit Ong, Suzanne M Paley, Pallavi Subhraveti
Brief Bioinform. 2019 Jul; 20(4): 1085–1093. Published online 2017 Aug 17. doi: 10.1093/bib/bbx085
PMCID:
PMC6781571
AbstractArticlePDF–885K
3.
Analysis of EAWAG-BBD pathway prediction system for the identification of malathion degrading microbes
Subramaniam Sivakumar, Palanivel Anitha, Balsubramanian Ramesh, Gopal Suresh
Bioinformation. 2017; 13(3): 73–77. Published online 2017 Mar 31. doi: 10.6026/97320630013073
PMCID:
PMC5450248
AbstractArticlePDF–717K
4.
The bacterial DnaA-trio replication origin element specifies ssDNA initiator binding
Tomas T. Richardson, Omar Harran, Heath Murray
Nature. Author manuscript; available in PMC 2016 Dec 8.
Published in final edited form as: Nature. 2016 Jun 8; 534(7607): 412–416. Published online 2016 Jun 8. doi: 10.1038/nature17962
Correction in:
Nature. 2016 Jun 29; 536(7617): 488.
PMCID:
PMC4913881
AbstractArticlePDF–3.9M
5.
Ion Torrent-based transcriptional assessment of a Corynebacterium pseudotuberculosis equi strain reveals denaturing high-performance liquid chromatography a promising rRNA depletion method
Thiago L P Castro, Nubia Seyffert, Rommel T J Ramos, Silvanira Barbosa, Rodrigo D O Carvalho, Anne Cybelle Pinto, Adriana Ribeiro Carneiro, Wanderson Marques Silva, Luis G C Pacheco, Christopher Downson, Maria P C Schneider, Anderson Miyoshi, Vasco Azevedo, Artur Silva
Microb Biotechnol. 2013 Mar; 6(2): 168–177. Published online 2013 Jan 15. doi: 10.1111/1751-7915.12020
PMCID:
PMC3917459
AbstractArticlePDF–587K
6.
Comparative analysis of mycobacterium and related actinomycetes yields insight into the evolution of mycobacterium tuberculosis pathogenesis
Abigail Manson McGuire, Brian Weiner, Sang Tae Park, Ilan Wapinski, Sahadevan Raman, Gregory Dolganov, Matthew Peterson, Robert Riley, Jeremy Zucker, Thomas Abeel, Jared White, Peter Sisk, Christian Stolte, Mike Koehrsen, Robert T Yamamoto, Milena Iacobelli-Martinez, Matthew J Kidd, Andreia M Maer, Gary K Schoolnik, Aviv Regev, James Galagan
BMC Genomics. 2012; 13: 120. Published online 2012 Mar 28. doi: 10.1186/1471-2164-13-120
PMCID:
PMC3388012
AbstractArticlePDF–3.6M
7.
Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example
Heiko Neuweger, Marcus Persicke, Stefan P Albaum, Thomas Bekel, Michael Dondrup, Andrea T Hüser, Jörn Winnebald, Jessica Schneider, Jörn Kalinowski, Alexander Goesmann
BMC Syst Biol. 2009; 3: 82. Published online 2009 Aug 23. doi: 10.1186/1752-0509-3-82
PMCID:
PMC2744654
AbstractArticlePDF–3.8M
8.
Development and experimental verification of a genome-scale metabolic model for Corynebacterium glutamicum
Yohei Shinfuku, Natee Sorpitiporn, Masahiro Sono, Chikara Furusawa, Takashi Hirasawa, Hiroshi Shimizu
Microb Cell Fact. 2009; 8: 43. Published online 2009 Aug 3. doi: 10.1186/1475-2859-8-43
PMCID:
PMC2728707
AbstractArticlePDF–684K
9.
Peak intensity prediction in MALDI-TOF mass spectrometry: A machine learning study to support quantitative proteomics
Wiebke Timm, Alexandra Scherbart, Sebastian Böcker, Oliver Kohlbacher, Tim W Nattkemper
BMC Bioinformatics. 2008; 9: 443. Published online 2008 Oct 20. doi: 10.1186/1471-2105-9-443
PMCID:
PMC2600826
AbstractArticlePDF–712K
10.
An in silico analysis of T-box regulated genes and T-box evolution in prokaryotes, with emphasis on prediction of substrate specificity of transporters
Michiel Wels, Tom Groot Kormelink, Michiel Kleerebezem, Roland J Siezen, Christof Francke
BMC Genomics. 2008; 9: 330. Published online 2008 Jul 14. doi: 10.1186/1471-2164-9-330
PMCID:
PMC2494555
AbstractArticlePDF–587K
11.
CoryneCenter – An online resource for the integrated analysis of corynebacterial genome and transcriptome data
Heiko Neuweger, Jan Baumbach, Stefan Albaum, Thomas Bekel, Michael Dondrup, Andrea T Hüser, Jörn Kalinowski, Sebastian Oehm, Alfred Pühler, Sven Rahmann, Jochen Weile, Alexander Goesmann
BMC Syst Biol. 2007; 1: 55. Published online 2007 Nov 22. doi: 10.1186/1752-0509-1-55
PMCID:
PMC2212648
AbstractArticlePDF–1.9M
12.
Evolution and expansion of the Mycobacterium tuberculosis PE and PPE multigene families and their association with the duplication of the ESAT-6 (esx) gene cluster regions
Nicolaas C Gey van Pittius, Samantha L Sampson, Hyeyoung Lee, Yeun Kim, Paul D van Helden, Robin M Warren
BMC Evol Biol. 2006; 6: 95. Published online 2006 Nov 15. doi: 10.1186/1471-2148-6-95
PMCID:
PMC1660551
AbstractArticlePDF–645K
13.
Diversity in domain architectures of Ser/Thr kinases and their homologues in prokaryotes
A Krupa, N Srinivasan
BMC Genomics. 2005; 6: 129. Published online 2005 Sep 19. doi: 10.1186/1471-2164-6-129
PMCID:
PMC1262709
AbstractArticlePDF–746K
14.
A Corynebacterium glutamicum gene conferring multidrug resistance in the heterologous host Escherichia coli.
W Jäger, J Kalinowski, A Pühler
J Bacteriol. 1997 Apr; 179(7): 2449–2451. doi: 10.1128/jb.179.7.2449-2451.1997
PMCID:
PMC178988
SummaryPDF–266K
15.
Lysine uptake and exchange in Corynebacterium glutamicum.
S Bröer, R Krämer
J Bacteriol. 1990 Dec; 172(12): 7241–7248. doi: 10.1128/jb.172.12.7241-7248.1990
PMCID:
PMC210848
SummaryPage BrowsePDF–1.5M
16.
Aerosolization behavior of antimicrobial resistance in animal farms: a field study from feces to fine particulate matter
Huibo Xin, Tianlei Qiu, Yajie Guo, Haoze Gao, Liqiu Zhang, Min Gao
Front Microbiol. 2023; 14: 1175265. Published online 2023 Apr 20. doi: 10.3389/fmicb.2023.1175265
PMCID:
PMC10157163
AbstractArticlePDF–4.2M
17.
Rational metabolic engineering of Corynebacterium glutamicum to create a producer of L-valine
M.E. Sheremetieva, K.E. Anufriev, T.M. Khlebodarova, N.A. Kolchanov, A.S. Yanenko
Vavilovskii Zhurnal Genet Selektsii. 2022 Dec; 26(8): 743–757. doi: 10.18699/VJGB-22-90
PMCID:
PMC9834717
AbstractArticlePDF–1.4M
18.
Dependence of the product chain-length on detergents for long-chain E-polyprenyl diphosphate synthases
Jian-Jung Pan, Gurusankar Ramamoorthy, C. Dale Poulter
Biochemistry. Author manuscript; available in PMC 2014 Jul 23.
Published in final edited form as: Biochemistry. 2013 Jul 23; 52(29): 10.1021/bi400681d. Published online 2013 Jul 11. doi: 10.1021/bi400681d
PMCID:
PMC3855619
AbstractArticlePDF–3.0M
19.
Peptide markers of aminoacyl tRNA synthetases facilitate taxa counting in metagenomic data
Erez Persi, Uri Weingart, Shiri Freilich, David Horn
BMC Genomics. 2012; 13: 65. Published online 2012 Feb 10. doi: 10.1186/1471-2164-13-65
PMCID:
PMC3319421
AbstractArticlePDF–966K
20.
Structures of Pup Ligase PafA and Depupylase Dop of the Prokaryotic Ubiquitin-like Modification Pathway
Dennis Özcelik, Jonas Barandun, Nikolaus Schmitz, Markus Sutter, Ethan Guth, Fred F. Damberger, Frédéric H.-T. Allain, Nenad Ban, Eilika Weber-Ban
Nat Commun. Author manuscript; available in PMC 2015 Mar 6.
Published in final edited form as: Nat Commun. 2012; 3: 1014. doi: 10.1038/ncomms2009
PMCID:
PMC4351746
AbstractArticlePDF–1.4M

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