U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    rfx1a regulatory factor X, 1a (influences HLA class II expression) [ Poecilia formosa (Amazon molly) ]

    Gene ID: 103145477, updated on 11-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    rfx1a
    Gene description
    regulatory factor X, 1a (influences HLA class II expression)
    See related
    Ensembl:ENSPFOG00000012660
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Poecilia formosa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
    Orthologs
    zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See rfx1a in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006800081.1 (1613771..1628136)

    NW_006800081.1Genomic Context describing neighboring genes Neighboring gene interleukin 12 receptor, beta 2a, like Neighboring gene relaxin 3a Neighboring gene GTPase IMAP family member 8-like Neighboring gene GTPase IMAP family member 8-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_006800081.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    MHC class II regulatory factor RFX1-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Poecilia_formosa-5.1.2

    Genomic

    1. NW_006800081.1 Reference Poecilia_formosa-5.1.2

      Range
      1613771..1628136
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016676871.1 → XP_016532357.1  MHC class II regulatory factor RFX1-like isoform X1

      Conserved Domains (2) summary
      pfam02257
      Location:422 → 494
      RFX_DNA_binding; RFX DNA-binding domain
      pfam04589
      Location:138 → 335
      RFX1_trans_act; RFX1 transcription activation region

    2. XM_016676872.1 → XP_016532358.1  MHC class II regulatory factor RFX1-like isoform X2

      Conserved Domains (2) summary
      pfam02257
      Location:422 → 492
      RFX_DNA_binding; RFX DNA-binding domain
      pfam04589
      Location:138 → 335
      RFX1_trans_act; RFX1 transcription activation region

    3. XM_016676873.1 → XP_016532359.1  MHC class II regulatory factor RFX1-like isoform X3

      Conserved Domains (2) summary
      pfam02257
      Location:401 → 477
      RFX_DNA_binding; RFX DNA-binding domain
      pfam04589
      Location:138 → 335
      RFX1_trans_act; RFX1 transcription activation region

    4. XM_016676874.1 → XP_016532360.1  MHC class II regulatory factor RFX1-like isoform X4

      Conserved Domains (2) summary
      pfam02257
      Location:404 → 475
      RFX_DNA_binding; RFX DNA-binding domain
      pfam04589
      Location:138 → 335
      RFX1_trans_act; RFX1 transcription activation region

    5. XM_007562929.2 → XP_007562991.1  MHC class II regulatory factor RFX1-like isoform X6

      Conserved Domains (2) summary
      pfam02257
      Location:372 → 444
      RFX_DNA_binding; RFX DNA-binding domain
      pfam04589
      Location:138 → 285
      RFX1_trans_act; RFX1 transcription activation region

    6. XM_007562930.2 → XP_007562992.1  MHC class II regulatory factor RFX1-like isoform X7

      UniProtKB/TrEMBL
      A0A087Y3W5
      Related
      ENSPFOP00000012718.2, ENSPFOT00000012735.2
      Conserved Domains (2) summary
      pfam02257
      Location:351 → 427
      RFX_DNA_binding; RFX DNA-binding domain
      pfam04589
      Location:138 → 285
      RFX1_trans_act; RFX1 transcription activation region

    7. XM_016676877.1 → XP_016532363.1  MHC class II regulatory factor RFX1-like isoform X5

      Conserved Domains (2) summary
      pfam02257
      Location:390 → 462
      RFX_DNA_binding; RFX DNA-binding domain
      pfam04589
      Location:106 → 303
      RFX1_trans_act; RFX1 transcription activation region
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases