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    LOC8262377 chromatin structure-remodeling complex protein SYD [ Ricinus communis (castor bean) ]

    Gene ID: 8262377, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC8262377
    Gene description
    chromatin structure-remodeling complex protein SYD
    Locus tag
    RCOM_0679520
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ricinus communis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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    Genomic context

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    See LOC8262377 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    34
    Annotation release Status Assembly Chr Location
    102 current ASM1957865v1 (GCF_019578655.1) 9 NC_063264.1 (2153543..2175113)
    101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994316.1 (520728..542309, complement)

    Chromosome 9 - NC_063264.1Genomic Context describing neighboring genes Neighboring gene classical arabinogalactan protein 25 Neighboring gene serine/threonine-protein kinase RUNKEL Neighboring gene uncharacterized LOC125371120 Neighboring gene bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic Neighboring gene uncharacterized LOC112534518

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromatin structure-remodeling complex protein SYD

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1957865v1

    Genomic

    1. NC_063264.1 Reference ASM1957865v1

      Range
      2153543..2175113
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002516811.4 → XP_002516857.1  chromatin structure-remodeling complex protein SYD

      See identical proteins and their annotated locations for XP_002516857.1

      UniProtKB/TrEMBL
      B9RSY8
      Conserved Domains (6) summary
      smart00951
      Location:437 → 470
      QLQ; QLQ is named after the conserved Gln, Leu, Gln motif
      cd00046
      Location:1018 → 1159
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00176
      Location:1001 → 1292
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:1316 → 1431
      Helicase_C; Helicase conserved C-terminal domain
      pfam07529
      Location:819 → 889
      HSA; HSA
      pfam14619
      Location:1525 → 1614
      SnAC; Snf2-ATP coupling, chromatin remodelling complex
    Nucleotide Protein
    Heading Accession and Version

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