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    SYS1 SYS1 golgi trafficking protein [ Bos taurus (cattle) ]

    Gene ID: 614236, updated on 4-Jun-2024

    Summary

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    Official Symbol
    SYS1provided by VGNC
    Official Full Name
    SYS1 golgi trafficking proteinprovided by VGNC
    Primary source
    VGNC:VGNC:97315
    See related
    BGD:BT18649; Ensembl:ENSBTAG00000005181
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SYS1 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 13 NC_037340.1 (73707353..73725249)

    Chromosome 13 - NC_037340.1Genomic Context describing neighboring genes Neighboring gene matrilin 4 Neighboring gene recombination signal binding protein for immunoglobulin kappa J region like Neighboring gene syndecan 4 Neighboring gene TP53 target 5 Neighboring gene dysbindin domain containing 2 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class T Neighboring gene serine peptidase inhibitor, Kunitz type 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037340.1 Chromosome 13 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC140251

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in Golgi to endosome transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in Golgi to plasma membrane protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SYS1 homolog
    Names
    SYS1 Golgi-localized integral membrane protein homolog
    dysbindin (dystrobrevin binding protein 1) domain containing 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001046527.2 → NP_001039992.1  protein SYS1 homolog

      See identical proteins and their annotated locations for NP_001039992.1

      Status: PROVISIONAL

      Source sequence(s)
      BC114777
      UniProtKB/Swiss-Prot
      Q1RMQ3
      Related
      ENSBTAP00000006825.3, ENSBTAT00000006825.4
      Conserved Domains (1) summary
      pfam09801
      Location:5 → 148
      SYS1; Integral membrane protein S linking to the trans Golgi network

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037340.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      73707353..73725249
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005214833.5 → XP_005214890.1  protein SYS1 homolog isoform X3

      See identical proteins and their annotated locations for XP_005214890.1

      Conserved Domains (1) summary
      pfam09801
      Location:5 → 78
      SYS1; Integral membrane protein S linking to the trans Golgi network

    2. XM_059892750.1 → XP_059748733.1  protein SYS1 homolog isoform X2

    3. XM_059892751.1 → XP_059748734.1  protein SYS1 homolog isoform X5

    4. XM_005214834.5 → XP_005214891.1  protein SYS1 homolog isoform X4

      See identical proteins and their annotated locations for XP_005214891.1

      Conserved Domains (1) summary
      pfam09801
      Location:5 → 76
      SYS1; Integral membrane protein S linking to the trans Golgi network

    5. XM_005214832.4 → XP_005214889.1  protein SYS1 homolog isoform X1

      See identical proteins and their annotated locations for XP_005214889.1

      UniProtKB/Swiss-Prot
      Q1RMQ3
      Conserved Domains (1) summary
      pfam09801
      Location:5 → 148
      SYS1; Integral membrane protein S linking to the trans Golgi network
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1RMQ3.1 GenPept UniProtKB/Swiss-Prot:Q1RMQ3

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