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    RRS1-DT RRS1 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 100505676, updated on 10-Oct-2023

    Summary

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    Official Symbol
    RRS1-DTprovided by HGNC
    Official Full Name
    RRS1 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:50465
    See related
    Ensembl:ENSG00000246145 AllianceGenome:HGNC:50465
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    RRS1-AS1
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See RRS1-DT in Genome Data Viewer
    Location:
    8q13.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (66419587..66428977, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (66845161..66854547, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (67331822..67341212, complement)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112268029 Neighboring gene uncharacterized LOC124901954 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr8:67098699-67099309 Neighboring gene uncharacterized LOC102724687 Neighboring gene long intergenic non-protein coding RNA 967 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:67140301-67141126 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:67141127-67141950 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:67164075-67164914 Neighboring gene MPRA-validated peak7057 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27477 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27478 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19252 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27479 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27480 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19253 Neighboring gene NANOG hESC enhancer GRCh37_chr8:67358104-67358753 Neighboring gene alcohol dehydrogenase iron containing 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:67370279-67370807 Neighboring gene ribosome biogenesis regulator 1 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Other Names

    • RRS1 antisense RNA 1 (head to head)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040434.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AI743648, AK125958
      Related
      ENST00000499642.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      66419587..66428977 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      66845161..66854547 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001242759.1: Suppressed sequence

      Description
      NM_001242759.1: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
    Nucleotide Protein
    Heading Accession and Version

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