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    PARP12 poly(ADP-ribose) polymerase family member 12 [ Homo sapiens (human) ]

    Gene ID: 64761, updated on 5-Mar-2024

    Summary

    Official Symbol
    PARP12provided by HGNC
    Official Full Name
    poly(ADP-ribose) polymerase family member 12provided by HGNC
    Primary source
    HGNC:HGNC:21919
    See related
    Ensembl:ENSG00000059378 MIM:612481; AllianceGenome:HGNC:21919
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ZC3H1; ARTD12; MST109; MSTP109; ZC3HDC1
    Summary
    Enables protein ADP-ribosylase activity. Involved in protein auto-ADP-ribosylation and protein mono-ADP-ribosylation. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in duodenum (RPKM 11.7), small intestine (RPKM 11.3) and 25 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See PARP12 in Genome Data Viewer
    Location:
    7q34
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (140023749..140062951, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (141337341..141376536, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (139723549..139762751, complement)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene thromboxane A synthase 1 Neighboring gene uncharacterized LOC107986853 Neighboring gene Sharpr-MPRA regulatory region 12519 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr7:139613504-139614703 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:139615605-139616804 Neighboring gene uncharacterized LOC105375532 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:139637955-139638455 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:139655263-139655763 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:139656695-139657195 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:139687657-139688158 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:139688159-139688658 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:139688714-139689231 Neighboring gene MPRA-validated peak6785 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26772 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:139716538-139717038 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18701 Neighboring gene MPRA-validated peak6786 silencer Neighboring gene MPRA-validated peak6788 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18702 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26773 Neighboring gene uncharacterized LOC124901757 Neighboring gene lysine demethylase 7A Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:139825166-139825666 Neighboring gene Sharpr-MPRA regulatory region 991 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18703 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18704 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:139876416-139877339

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • FLJ22693

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables NAD+ ADP-ribosyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables NAD+- protein-cysteine ADP-ribosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables NAD+-protein ADP-ribosyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables NAD+-protein ADP-ribosyltransferase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables RNA binding HDA PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables nucleotidyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in protein auto-ADP-ribosylation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    protein mono-ADP-ribosyltransferase PARP12
    Names
    ADP-ribosyltransferase diphtheria toxin-like 12
    poly [ADP-ribose] polymerase 12
    zinc finger CCCH type domain containing 1
    NP_073587.1
    XP_005250095.1
    XP_005250096.1
    XP_005250097.1
    XP_047276695.1
    XP_047276697.1
    XP_047276698.1
    XP_054214812.1
    XP_054214813.1
    XP_054214814.1
    XP_054214815.1
    XP_054214816.1
    XP_054214817.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_022750.4NP_073587.1  protein mono-ADP-ribosyltransferase PARP12

      See identical proteins and their annotated locations for NP_073587.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the protein.
      Source sequence(s)
      AC004849, AC004961, AC025816
      Consensus CDS
      CCDS5857.1
      UniProtKB/Swiss-Prot
      Q9H0J9, Q9H610, Q9NP36, Q9NTI3
      UniProtKB/TrEMBL
      A4D1T0
      Related
      ENSP00000263549.3, ENST00000263549.8
      Conserved Domains (3) summary
      smart00678
      Location:299372
      WWE; Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis
      smart00356
      Location:177200
      ZnF_C3H1; zinc finger
      cd01439
      Location:561677
      TCCD_inducible_PARP_like; Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component ...

    RNA

    1. NR_130117.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an internal exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AC004849, AC004961, AC025816

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      140023749..140062951 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047420739.1XP_047276695.1  protein mono-ADP-ribosyltransferase PARP12 isoform X1

    2. XM_047420741.1XP_047276697.1  protein mono-ADP-ribosyltransferase PARP12 isoform X2

    3. XM_047420742.1XP_047276698.1  protein mono-ADP-ribosyltransferase PARP12 isoform X4

      UniProtKB/TrEMBL
      G5E9U9
      Related
      ENSP00000417730.1, ENST00000473341.5
    4. XM_005250038.4XP_005250095.1  protein mono-ADP-ribosyltransferase PARP12 isoform X3

      Conserved Domains (3) summary
      smart00678
      Location:299372
      WWE; Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis
      smart00356
      Location:177200
      ZnF_C3H1; zinc finger
      pfam18606
      Location:567
      HTH_53; Zap helix turn helix N-terminal domain
    5. XM_005250039.5XP_005250096.1  protein mono-ADP-ribosyltransferase PARP12 isoform X4

      See identical proteins and their annotated locations for XP_005250096.1

      UniProtKB/TrEMBL
      G5E9U9
      Conserved Domains (3) summary
      smart00678
      Location:299372
      WWE; Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis
      smart00356
      Location:177200
      ZnF_C3H1; zinc finger
      pfam18606
      Location:567
      HTH_53; Zap helix turn helix N-terminal domain
    6. XM_005250040.5XP_005250097.1  protein mono-ADP-ribosyltransferase PARP12 isoform X5

      Conserved Domains (3) summary
      smart00678
      Location:299372
      WWE; Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis
      smart00356
      Location:177200
      ZnF_C3H1; zinc finger
      pfam18606
      Location:567
      HTH_53; Zap helix turn helix N-terminal domain

    RNA

    1. XR_927514.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      141337341..141376536 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054358837.1XP_054214812.1  protein mono-ADP-ribosyltransferase PARP12 isoform X1

    2. XM_054358838.1XP_054214813.1  protein mono-ADP-ribosyltransferase PARP12 isoform X2

    3. XM_054358840.1XP_054214815.1  protein mono-ADP-ribosyltransferase PARP12 isoform X4

      UniProtKB/TrEMBL
      G5E9U9
    4. XM_054358839.1XP_054214814.1  protein mono-ADP-ribosyltransferase PARP12 isoform X3

    5. XM_054358841.1XP_054214816.1  protein mono-ADP-ribosyltransferase PARP12 isoform X4

      UniProtKB/TrEMBL
      G5E9U9
    6. XM_054358842.1XP_054214817.1  protein mono-ADP-ribosyltransferase PARP12 isoform X5

    RNA

    1. XR_008487735.1 RNA Sequence