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    LOC407835 mitogen-activated protein kinase kinase 2 pseudogene [ Homo sapiens (human) ]

    Gene ID: 407835, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC407835
    Gene description
    mitogen-activated protein kinase kinase 2 pseudogene
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LOC407835 in Genome Data Viewer
    Location:
    7q32.1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (129126271..129130793)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (130439156..130443687)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (128766325..128770847)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene U4 spliceosomal RNA Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr7:128750584-128751247 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26621 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26622 Neighboring gene CYCS pseudogene 20 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:128767334-128767834 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26623 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18623 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26624 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:128789516-128790112 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:128790113-128790709 Neighboring gene tetraspanin 33 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18624 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26625 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:128809737-128810606 Neighboring gene RNY1 pseudogene 11 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26626 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18625 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18626 Neighboring gene smoothened, frizzled class receptor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Castello A, et al. Cell, 2012 Jun 8. PMID 22658674
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Other Names

    • mitogen-activated protein kinase kinase 2; protein kinase, mitogen-activated, kinase 2, p45 (MAP kinase kinase 2)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_002144.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC011005

    2. NR_172946.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC011005

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      129126271..129130793
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      130439156..130443687
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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