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    SNHG5 small nucleolar RNA host gene 5 [ Homo sapiens (human) ]

    Gene ID: 387066, updated on 10-Mar-2024

    Summary

    Official Symbol
    SNHG5provided by HGNC
    Official Full Name
    small nucleolar RNA host gene 5provided by HGNC
    Primary source
    HGNC:HGNC:21026
    See related
    Ensembl:ENSG00000203875 MIM:613263; AllianceGenome:HGNC:21026
    Gene type
    ncRNA
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    U50HG; C6orf160; LINC00044; NCRNA00044
    Summary
    This gene represent a snoRNA host gene and produces a long non-coding RNA. This RNA may regulate gene expression by acting as a sponge for microRNAs. This transcript may also stabilize mRNAs by blocking degradation by staufen double-stranded RNA binding protein 1. [provided by RefSeq, Dec 2017]
    Expression
    Ubiquitous expression in thyroid (RPKM 203.0), lymph node (RPKM 162.8) and 25 other tissues See more
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    Genomic context

    See SNHG5 in Genome Data Viewer
    Location:
    6q14.3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (85677007..85678733, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (86893842..86895568, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (86386725..86388451, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene synaptotagmin binding cytoplasmic RNA interacting protein Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17368 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17369 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17370 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:86378928-86379449 Neighboring gene MPRA-validated peak5939 silencer Neighboring gene pyruvate kinase M1/2 pseudogene 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24790 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24791 Neighboring gene small nucleolar RNA, C/D box 50A Neighboring gene small nucleolar RNA, C/D box 50B Neighboring gene heat shock protein 90 alpha family class B member 1 pseudogene Neighboring gene SMIM11 pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Other Names

    • U50 host
    • long intergenic non-protein coding RNA 44
    • small nucleolar RNA host gene 5 (non-protein coding)

    Clone Names

    • MGC16362

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_003038.2 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      CD384894, CD388674
      Related
      ENST00000669678.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      85677007..85678733 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      86893842..86895568 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)