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    LOC100421281 high density lipoprotein binding protein pseudogene [ Homo sapiens (human) ]

    Gene ID: 100421281, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC100421281
    Gene description
    high density lipoprotein binding protein pseudogene
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LOC100421281 in Genome Data Viewer
    Location:
    1p12
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (118712997..118713864)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (118726208..118727075)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (119255620..119256487)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene RNA, 5S ribosomal pseudogene 56 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:118881859-118883058 Neighboring gene VISTA enhancer hs1428 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:119059627-119060128 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:119078188-119078646 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:119115949-119116512 Neighboring gene proteasome 26S subunit, ATPase 1 pseudogene 12 Neighboring gene uncharacterized LOC107985447 Neighboring gene MPRA-validated peak393 silencer Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:119395269-119395890 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:119407731-119408930 Neighboring gene skeletal muscle cis-regulatory module in TBX15 intron Neighboring gene Sharpr-MPRA regulatory region 5383 Neighboring gene T-box transcription factor 15 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:119502746-119503360 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:119527836-119528513 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:119529833-119530366 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:119530367-119530899

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_027131.2 

      Range
      101..968
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      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      118712997..118713864
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      118726208..118727075
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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