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    CDK5P1 cyclin dependent kinase 5 pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 392265, updated on 10-Oct-2023

    Summary

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    Official Symbol
    CDK5P1provided by HGNC
    Official Full Name
    cyclin dependent kinase 5 pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:21261
    See related
    Ensembl:ENSG00000235165 AllianceGenome:HGNC:21261
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CDK5PS
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    Genomic context

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    Location:
    8q24.13
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (122769229..122770318)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (123900419..123901508)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (123781468..123782557)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene Sharpr-MPRA regulatory region 1583 Neighboring gene long intergenic non-protein coding RNA 1151 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:123701812-123703011 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:123705641-123706840 Neighboring gene uncharacterized LOC107986904 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27852 Neighboring gene Sharpr-MPRA regulatory region 2746 Neighboring gene hESC enhancers GRCh37_chr8:123770608-123771162 and GRCh37_chr8:123771163-123771718 Neighboring gene uncharacterized LOC124902012 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:123792337-123792838 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:123792839-123793338 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27853 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19486 Neighboring gene NANOG hESC enhancer GRCh37_chr8:123795211-123795745 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19487 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19488 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27854 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:123799669-123800426 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27856 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19489 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27857 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:123809400-123810599 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19490 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:123814233-123815192 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:123815193-123816150 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:123817802-123819001 Neighboring gene zinc fingers and homeoboxes 2 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:123848010-123849209 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:123849857-123850688 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27859 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:123869217-123869717 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:123874507-123875706 Neighboring gene uncharacterized LOC124902011 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr8:123927788-123928344 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27860

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • cyclin-dependent kinase 5 pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_022432.1 

      Range
      101..1190
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      122769229..122770318
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      123900419..123901508
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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