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IP6K1 inositol hexakisphosphate kinase 1 [ Homo sapiens (human) ]

Gene ID: 9807, updated on 5-Mar-2024

Summary

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Official Symbol
IP6K1provided by HGNC
Official Full Name
inositol hexakisphosphate kinase 1provided by HGNC
Primary source
HGNC:HGNC:18360
See related
Ensembl:ENSG00000176095 MIM:606991; AllianceGenome:HGNC:18360
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PiUS; IHPK1
Summary
This gene encodes a member of the inositol phosphokinase family. The encoded protein may be responsible for the conversion of inositol hexakisphosphate (InsP6) to diphosphoinositol pentakisphosphate (InsP7/PP-InsP5). It may also convert 1,3,4,5,6-pentakisphosphate (InsP5) to PP-InsP4. Alternatively spliced transcript variants have been described. [provided by RefSeq, Jun 2011]
Expression
Ubiquitous expression in brain (RPKM 17.4), testis (RPKM 16.8) and 25 other tissues See more
Orthologs
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Genomic context

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Location:
3p21.31
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (49724294..49786542, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (49753580..49816428, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (49761727..49823975, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ring finger protein 123 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:49754537-49755037 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:49756083-49756890 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19873 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:49758476-49758653 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19874 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14372 Neighboring gene adhesion molecule with Ig like domain 3 Neighboring gene GDP-mannose pyrophosphorylase B Neighboring gene cytochrome c oxidase subunit 6C pseudogene 14 Neighboring gene PHF5A pseudogene 3 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:49823653-49824342 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19875 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:49824674-49824838 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:49825619-49825828 Neighboring gene cadherin related family member 4 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14374 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14375 Neighboring gene inka box actin regulator 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. IP6K1 upregulates the formation of processing bodies by influencing protein-protein interactions on the mRNA cap. Shah A, et al. J Cell Sci, 2021 Dec 15. PMID 34841428
  2. Discovery of InsP6-kinases as InsP6-dephosphorylating enzymes provides a new mechanism of cytosolic InsP6 degradation driven by the cellular ATP/ADP ratio. Wundenberg T, et al. Biochem J, 2014 Aug 15. PMID 24865181
  3. The IHPK1 gene is disrupted at the 3p21.31 breakpoint of t(3;9) in a family with type 2 diabetes mellitus. Kamimura J, et al. J Hum Genet, 2004. PMID 15221640
  4. Pleiotropic actions of IP6K1 mediate hepatic metabolic dysfunction to promote nonalcoholic fatty liver disease and steatohepatitis. Mukherjee S, et al. Mol Metab, 2021 Dec. PMID 34757046, Free PMC Article
  5. miR-125a-5p impairs the metastatic potential in breast cancer via IP(6)K1 targeting. Minini M, et al. Cancer Lett, 2021 Nov 1. PMID 34229060

See all (47) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Pleiotropic actions of IP6K1 mediate hepatic metabolic dysfunction to promote nonalcoholic fatty liver disease and steatohepatitis.
    Title: Pleiotropic actions of IP6K1 mediate hepatic metabolic dysfunction to promote nonalcoholic fatty liver disease and steatohepatitis.
  2. IP6K1 upregulates the formation of processing bodies by influencing protein-protein interactions on the mRNA cap.
    Title: IP6K1 upregulates the formation of processing bodies by influencing protein-protein interactions on the mRNA cap.
  3. miR-125a-5p impairs the metastatic potential in breast cancer via IP6K1 targeting.
    Title: miR-125a-5p impairs the metastatic potential in breast cancer via IP(6)K1 targeting.
  4. conclude that IP6K1 and -2 together control inositol pyrophosphate metabolism and thereby physiologically regulate phosphate export and other aspects of mammalian cellular phosphate homeostasis
    Title: The inositol hexakisphosphate kinases IP6K1 and -2 regulate human cellular phosphate homeostasis, including XPR1-mediated phosphate export.
  5. the unique metabolic sensing properties of IP6K1 guarantees appropriate concentrations of IP7 and thereby both correct basal insulin secretion and intact first phase insulin release.
    Title: Inositol hexakisphosphate kinase 1 is a metabolic sensor in pancreatic β-cells.
  6. IP6K1 physiologically regulates neuronal migration by binding to alpha-actinin and influencing phosphorylation of both FAK and alpha-actinin through its product 5-diphosphoinositol pentakisphosphate.
    Title: Neuronal migration is mediated by inositol hexakisphosphate kinase 1 via α-actinin and focal adhesion kinase.
  7. provides the first evidence for the involvement of IP6Ks in dynein function and proposes that inositol pyrophosphate-mediated pyrophosphorylation may act as a regulatory signal to enhance dynein-driven transport
    Title: Inositol hexakisphosphate kinase 1 (IP6K1) activity is required for cytoplasmic dynein-driven transport.
  8. IP6K1 is also involved in early cytoskeleton remodeling events during cancer progression.
    Title: Deletion of inositol hexakisphosphate kinase 1 (IP6K1) reduces cell migration and invasion, conferring protection from aerodigestive tract carcinoma in mice.
  9. IP6K1 is a novel CRL4 subunit that transduces UV signals to mediate disassembly of the CRL4-CSN complex, thereby regulating nucleotide excision repair and cell death.
    Title: Inositol hexakisphosphate kinase-1 mediates assembly/disassembly of the CRL4-signalosome complex to regulate DNA repair and cell death.
  10. we identified IP6Ks as novel nuclear and cytosolic InsP6- (and InsP5-) dephosphorylating enzymes whose activity is sensitively driven by a decrease in the cellular ATP/ADP ratio
    Title: Discovery of InsP6-kinases as InsP6-dephosphorylating enzymes provides a new mechanism of cytosolic InsP6 degradation driven by the cellular ATP/ADP ratio.
Submit: New GeneRIF Correction See all GeneRIFs (14)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
A genome-wide association study identifies a novel locus at 6q22.1 associated with ulcerative colitis.
EBI GWAS Catalog
Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • MGC9925

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables inositol 5-diphosphate pentakisphosphate 5-kinase activity TAS
Traceable Author Statement
more info
  
enables inositol diphosphate tetrakisphosphate kinase activity TAS
Traceable Author Statement
more info
  
enables inositol heptakisphosphate kinase activity TAS
Traceable Author Statement
more info
  
enables inositol hexakisphosphate 1-kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables inositol hexakisphosphate 3-kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables inositol hexakisphosphate 5-kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables inositol hexakisphosphate kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables inositol hexakisphosphate kinase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables inositol hexakisphosphate kinase activity TAS
Traceable Author Statement
more info
  
enables inositol-1,3,4,5,6-pentakisphosphate kinase activity TAS
Traceable Author Statement
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in inositol phosphate biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in inositol phosphate metabolic process TAS
Traceable Author Statement
more info
  
involved_in negative regulation of cold-induced thermogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
involved_in phosphatidylinositol phosphate biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in phosphatidylinositol phosphate biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in phosphorylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
  
located_in cytosol TAS
Traceable Author Statement
more info
  
located_in fibrillar center IDA
Inferred from Direct Assay
more info
  
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
  
located_in nucleoplasm TAS
Traceable Author Statement
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
inositol hexakisphosphate kinase 1
Names
ATP:1D-myo-inositol-hexakisphosphate phosphotransferase
Pi uptake stimulator
inositol hexaphosphate kinase 1
insP6 kinase 1
NP_001006115.1
NP_001229758.1
NP_695005.1
XP_047305279.1
XP_047305280.1
XP_054204557.1
XP_054204558.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001006115.3 → NP_001006115.1  inositol hexakisphosphate kinase 1 isoform 2

    See identical proteins and their annotated locations for NP_001006115.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) lacks an in-frame portion of the 5' coding region compared to variant 1. The resulting isoform (2) has a shorter N-terminus compared to isoform 1.
    Source sequence(s)
    AC099668, AC139451, AL561521, BE387671, BG720032, BI193048, CB152138, D87452
    Consensus CDS
    CCDS43092.1
    UniProtKB/Swiss-Prot
    Q92551
    Related
    ENSP00000378659.1, ENST00000395238.5
    Conserved Domains (1) summary
    pfam03770
    Location:42 → 269
    IPK; Inositol polyphosphate kinase

  2. NM_001242829.2 → NP_001229758.1  inositol hexakisphosphate kinase 1 isoform 1

    See identical proteins and their annotated locations for NP_001229758.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1 and 3 encode the same protein.
    Source sequence(s)
    AC099668, AC139451, D87452, DB099697
    Consensus CDS
    CCDS33760.1
    UniProtKB/Swiss-Prot
    A8K157, A8MUX4, Q7L3I7, Q92551, Q96E38
    Related
    ENSP00000482032.1, ENST00000613416.4
    Conserved Domains (1) summary
    pfam03770
    Location:207 → 434
    IPK; Inositol polyphosphate kinase

  3. NM_153273.4 → NP_695005.1  inositol hexakisphosphate kinase 1 isoform 1

    See identical proteins and their annotated locations for NP_695005.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1). Variants 1 and 3 encode the same protein.
    Source sequence(s)
    AC099668, AC139451, AL561521, BE387671, BG720032, CB152138, D87452
    Consensus CDS
    CCDS33760.1
    UniProtKB/Swiss-Prot
    A8K157, A8MUX4, Q7L3I7, Q92551, Q96E38
    Related
    ENSP00000323780.4, ENST00000321599.9
    Conserved Domains (1) summary
    pfam03770
    Location:207 → 434
    IPK; Inositol polyphosphate kinase

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    49724294..49786542 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047449323.1 → XP_047305279.1  inositol hexakisphosphate kinase 1 isoform X1

    UniProtKB/Swiss-Prot
    A8K157, A8MUX4, Q7L3I7, Q92551, Q96E38

  2. XM_047449324.1 → XP_047305280.1  inositol hexakisphosphate kinase 1 isoform X1

    UniProtKB/Swiss-Prot
    A8K157, A8MUX4, Q7L3I7, Q92551, Q96E38

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    49753580..49816428 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054348582.1 → XP_054204557.1  inositol hexakisphosphate kinase 1 isoform X1

    UniProtKB/Swiss-Prot
    A8K157, A8MUX4, Q7L3I7, Q92551, Q96E38

  2. XM_054348583.1 → XP_054204558.1  inositol hexakisphosphate kinase 1 isoform X1

    UniProtKB/Swiss-Prot
    A8K157, A8MUX4, Q7L3I7, Q92551, Q96E38
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q92551.3 GenPept UniProtKB/Swiss-Prot:Q92551

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